Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016721.1 Corchorus olitorius cultivar O-4 contig16754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33250

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--109
33
3.2
33
79
2
124
12
33
33
19
1.89
3334--3417
39
2.2
39
95
0
150
14
51
10
23
1.73
3815--3891
33
2.3
33
88
0
109
15
38
33
11
1.84
4049--4087
19
2.1
19
95
0
69
33
0
30
35
1.58
4560--4607
21
2.3
21
82
3
53
37
16
31
14
1.89
10524--10568
21
2.1
21
83
0
54
35
31
17
15
1.92
15911--15975
32
2.0
32
90
0
103
27
7
9
55
1.59
17496--17533
11
3.5
11
89
10
51
39
0
2
57
1.12
24811--24835
12
2.1
12
100
0
50
40
16
20
24
1.91
24939--25019
10
8.7
10
68
20
59
43
0
1
55
1.07
24945--25019
7
10.6
7
78
18
66
44
0
1
54
1.08
24939--25007
29
2.6
26
86
9
86
40
0
1
57
1.07
28125--28198
33
2.2
34
81
9
82
5
36
44
13
1.67
28613--28680
27
2.5
27
86
9
77
17
17
45
19
1.86
28952--28993
20
2.1
20
95
0
75
52
0
4
42
1.22
30474--30514
21
2.0
21
90
0
64
17
2
17
63
1.42
32718--32742
12
2.1
12
100
0
50
76
0
0
24
0.80
32714--32766
19
2.8
19
75
11
54
64
3
0
32
1.12

Tables:   1

The End!