Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016722.1 Corchorus olitorius cultivar O-4 contig16755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40687

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7290--7323
5
6.8
5
90
9
52
0
17
0
82
0.67
7664--7702
20
2.0
20
89
0
60
56
2
0
41
1.13
7661--7712
27
2.0
26
88
3
77
57
1
0
40
1.10
7740--7808
32
2.1
33
89
2
104
15
37
36
10
1.82
8028--8074
17
2.7
18
81
12
53
46
0
23
29
1.52
10978--11306
177
1.9
177
83
5
441
35
13
15
35
1.87
11853--11877
7
3.6
7
100
0
50
32
28
0
40
1.57
13287--13366
42
1.9
42
97
0
151
31
7
13
47
1.71
13287--13353
21
3.2
21
68
16
66
29
5
13
50
1.65
30664--30697
2
17.0
2
100
0
68
50
0
0
50
1.00
34086--34120
9
3.7
9
85
14
52
80
8
2
8
1.01
34079--34120
20
2.0
21
90
4
68
76
9
4
9
1.15
34069--34122
11
4.8
11
80
17
58
72
9
9
9
1.29

Tables:   1

The End!