Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016724.1 Corchorus olitorius cultivar O-4 contig16757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7265
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2025 original size:29 final size:29

Alignment explanation


    Indices: 1988--2055  Score: 111
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       1978 ACTCGAAGCT

                                  *       
       1988 TCAACCACAAGTGCAGAA-CTCGCACTTAA
          1 TCAACCACAAGTGCA-AATCTCACACTTAA

                                         
       2017 TCAACCACAAGTGCAAATCTCACACTTAA
          1 TCAACCACAAGTGCAAATCTCACACTTAA

                      
       2046 TCAACCACAA
          1 TCAACCACAA

       2056 TAAACAAAGT


Statistics
Matches: 37,  Mismatches: 1, Indels: 2
        0.93            0.03        0.05

Matches are distributed among these distances:
  28    2  0.05
  29   35  0.95

ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18


Consensus pattern (29 bp):   
TCAACCACAAGTGCAAATCTCACACTTAA
Done.