Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016729.1 Corchorus olitorius cultivar O-4 contig16762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55869

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2608--2643
15
2.3
16
90
4
56
69
11
5
13
1.34
9986--10013
14
2.0
14
100
0
56
42
7
21
28
1.79
12162--12224
30
2.1
30
88
5
92
28
14
36
20
1.92
32179--32213
18
1.9
18
94
0
61
31
8
14
45
1.75
35539--35594
23
2.4
24
80
14
71
44
0
1
53
1.11
39868--39925
23
2.5
23
91
2
80
22
36
12
29
1.90
39879--39925
23
2.0
23
100
0
94
25
36
8
29
1.86
40793--40853
30
2.0
30
100
0
122
22
13
37
26
1.91
40997--41074
34
2.5
32
81
10
90
65
5
23
6
1.36
42883--42918
18
2.0
18
100
0
72
33
22
11
33
1.89
47785--47830
23
2.0
23
100
0
92
21
34
0
43
1.53
55740--55770
14
2.3
14
94
5
55
16
0
9
74
1.07
55752--55806
24
2.3
24
78
6
58
9
7
18
65
1.44
55836--55869
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!