Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016731.1 Corchorus olitorius cultivar O-4 contig16764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12193
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Found at i:11844 original size:15 final size:16

Alignment explanation


    Indices: 11811--11844  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

      11801 TTACTTTGCT

                            
      11811 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
      11827 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

               
      11842 TTG
          1 TTG

      11845 CTTCCTTTCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    8  0.47
  16    9  0.53

ACGTcount: A:0.18, C:0.06, G:0.15, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA
Done.