Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016732.1 Corchorus olitorius cultivar O-4 contig16765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37986

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1299--1342
18
2.4
18
96
0
79
40
18
18
22
1.91
6497--6530
16
2.2
16
89
5
52
17
5
11
64
1.45
12718--12762
16
3.0
15
87
12
58
60
17
8
13
1.58
23511--23539
15
1.9
15
100
0
58
72
6
6
13
1.26
25819--25848
15
2.0
15
100
0
60
33
6
6
53
1.53
27198--27252
23
2.3
25
81
6
60
21
45
7
25
1.77
28090--28130
21
1.9
22
95
5
75
21
19
9
48
1.77
28091--28136
21
2.2
21
84
7
58
26
15
10
47
1.78
29669--29969
150
2.0
150
98
0
584
24
24
26
23
2.00
32607--32668
28
2.2
28
97
0
115
29
46
12
11
1.77
33891--33923
17
1.9
17
88
11
50
57
3
6
33
1.38
35395--36004
35
17.3
35
80
4
600
18
19
18
43
1.88
35402--36004
105
5.7
105
83
3
692
18
19
18
43
1.88
35977--36030
26
2.1
26
96
0
99
16
22
20
40
1.91
36195--36448
69
3.7
69
98
0
490
26
29
15
27
1.96
36627--37295
30
22.2
30
89
2
973
21
13
17
47
1.82

Tables:   1

The End!