Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016733.1 Corchorus olitorius cultivar O-4 contig16766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59192

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--33
15
2.0
15
100
0
60
33
6
6
53
1.53
2237--2277
21
1.9
22
95
5
75
21
19
9
48
1.77
2238--2283
21
2.2
21
84
7
58
26
15
10
47
1.78
3290--3337
16
3.0
16
78
0
51
70
0
18
10
1.15
6892--6927
19
1.9
18
88
5
54
33
22
2
41
1.68
16750--16794
6
7.8
6
81
18
60
80
0
20
0
0.72
16750--16794
17
2.7
15
83
16
54
80
0
20
0
0.72
16750--16794
23
1.9
24
95
4
83
80
0
20
0
0.72
18269--18298
15
2.1
14
93
6
51
0
3
20
76
0.92
21965--22109
75
2.0
75
83
5
188
36
12
20
31
1.89
22986--23030
23
2.0
23
100
0
90
75
4
11
8
1.17
23025--23082
13
4.2
13
72
10
53
68
12
5
13
1.35
23854--24003
50
3.0
50
88
1
203
32
14
14
40
1.85
24598--25084
50
9.8
50
93
1
807
29
27
14
28
1.95
32926--33066
50
2.8
49
86
2
201
32
17
14
35
1.90
33969--34536
69
8.2
69
93
0
893
27
28
16
28
1.97
34571--34847
69
4.0
68
84
4
333
23
27
17
31
1.97
35542--35613
27
2.7
25
85
10
81
16
16
27
38
1.90
35825--35893
34
2.0
34
97
0
129
23
14
13
49
1.78
44942--44968
10
2.7
10
100
0
54
92
0
7
0
0.38
46137--46246
58
1.9
58
83
7
143
30
13
20
35
1.91
47526--47595
36
1.9
36
88
5
106
21
10
8
60
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48109--48515
204
2.0
201
97
1
760
43
8
11
36
1.72
48591--48636
24
2.0
23
95
4
83
54
8
6
30
1.56
48627--48707
39
2.0
40
92
2
137
38
2
7
51
1.43
48643--48703
18
3.2
18
68
9
50
36
1
6
55
1.36
50748--50854
52
2.1
52
100
0
214
35
11
23
29
1.90
53669--53780
4
28.0
4
96
0
206
49
24
0
25
1.56
53997--54101
42
2.5
42
93
0
183
36
30
16
17
1.91
54798--54850
22
2.3
23
81
12
65
30
45
18
5
1.73
54840--54897
16
3.6
16
79
9
73
37
39
15
6
1.74
54840--54941
32
3.2
32
80
12
113
38
41
13
6
1.72
56213--56243
16
1.9
16
93
0
53
45
32
16
6
1.72
56904--57074
94
1.8
93
89
1
270
50
1
14
33
1.52
58462--58625
22
7.5
22
75
9
131
35
17
10
35
1.85
58492--58609
43
2.7
43
76
6
123
35
18
11
33
1.88
58690--58731
22
1.9
22
90
0
66
38
16
11
33
1.86
58691--58756
22
3.0
21
80
10
62
31
18
13
36
1.90
58723--58765
22
2.0
22
81
9
52
30
20
13
34
1.92
59031--59080
6
8.7
6
79
16
52
2
4
16
78
1.00
59031--59080
11
4.4
11
84
5
64
2
4
16
78
1.00

Tables:   1

The End!