Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016734.1 Corchorus olitorius cultivar O-4 contig16767, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26911

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1070--1126
2
28.5
2
85
7
80
47
0
5
47
1.24
10034--10065
11
2.9
11
90
0
55
81
15
3
0
0.82
10032--10087
18
3.1
18
72
27
55
78
14
3
3
1.02
15586--15724
69
2.0
69
100
0
278
14
31
12
41
1.84
18923--18968
2
23.0
2
95
0
83
47
0
2
50
1.13
18968--18992
2
12.5
2
100
0
50
0
0
48
52
1.00
22448--22542
50
1.9
50
97
0
181
40
24
11
24
1.88
23806--23867
31
2.0
31
96
0
115
30
8
35
25
1.85
23809--23863
17
3.4
17
68
14
53
34
7
34
23
1.83

Tables:   1

The End!