Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016735.1 Corchorus olitorius cultivar O-4 contig16768, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48897

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
494--529
19
1.9
18
88
5
54
27
22
8
41
1.82
768--887
44
2.7
45
88
5
181
32
20
18
28
1.96
4741--4796
2
30.0
2
86
13
66
53
3
0
42
1.18
4749--4793
16
2.8
16
100
0
90
55
4
0
40
1.20
14108--14191
45
1.9
42
88
7
123
41
20
5
32
1.76
15641--15678
18
2.2
17
86
9
51
23
34
28
13
1.92
19187--19236
25
2.0
26
84
7
68
30
44
10
16
1.80
20226--20266
13
3.2
13
77
22
50
26
0
0
73
0.84
20195--20266
26
2.7
26
78
22
78
29
0
1
69
0.97
20195--20260
17
3.7
17
73
20
55
28
0
1
69
0.97
21195--21484
22
13.5
22
76
11
221
36
17
8
37
1.81
21590--22001
22
18.6
22
72
12
254
35
17
8
38
1.80
21719--21803
21
3.8
24
80
10
74
35
16
9
38
1.81
21614--22001
87
4.4
88
71
9
270
36
17
8
38
1.80
22039--22094
22
2.5
22
82
5
67
41
12
8
37
1.74
22085--22160
22
3.5
22
74
13
75
34
14
15
35
1.88
22083--22167
44
1.9
44
92
0
143
35
15
15
34
1.89
22156--22213
22
2.6
22
75
5
55
41
18
5
34
1.73
22089--22212
44
2.8
44
79
4
126
37
17
11
33
1.86
41152--41266
58
2.0
58
100
0
230
35
10
15
38
1.82
47563--48366
279
3.0
254
82
10
903
36
17
11
34
1.86
48537--48561
13
1.9
13
100
0
50
56
0
0
44
0.99

Tables:   1

The End!