Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016740.1 Corchorus olitorius cultivar O-4 contig16773, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15454

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
532--573
22
1.9
22
85
0
57
40
26
21
11
1.88
584--629
20
2.3
20
96
0
83
41
4
6
47
1.49
1984--2028
12
3.5
13
81
9
56
57
11
0
31
1.33
3424--3678
133
1.9
133
87
4
372
49
3
11
36
1.56
3836--4098
130
2.0
131
87
3
379
38
9
2
50
1.48
4950--4990
21
1.9
22
85
5
57
9
14
29
46
1.77
5251--5280
15
2.0
15
100
0
60
13
20
20
46
1.83
8458--8492
7
5.0
7
100
0
70
14
0
28
57
1.38
14814--14859
19
2.4
19
85
7
58
26
39
26
8
1.85

Tables:   1

The End!