Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016743.1 Corchorus olitorius cultivar O-4 contig16776, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50156

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1730--1760
15
2.1
15
93
0
53
48
0
0
51
1.00
1707--1757
19
2.7
18
82
8
66
52
1
0
45
1.12
11504--11551
3
16.0
3
91
8
80
2
31
0
66
1.03
11709--11776
9
7.6
9
100
0
136
0
54
33
11
1.37
18676--18925
134
1.9
132
82
5
315
51
2
10
34
1.51
21024--21152
64
2.0
64
92
0
213
48
15
10
25
1.78
21135--22026
219
4.2
218
88
4
1303
36
7
20
34
1.82
21504--22298
205
3.9
203
76
13
766
35
7
21
35
1.82
21821--22223
195
2.1
197
92
3
679
35
6
21
36
1.80
21184--22298
424
2.7
415
84
10
1537
35
7
21
35
1.82
22780--24091
218
6.0
219
90
1
1934
35
20
7
35
1.81
22780--24091
437
3.0
436
91
1
2018
35
20
7
35
1.81
28653--28693
10
4.1
10
87
9
57
90
4
4
0
0.56
30893--30939
4
11.5
4
82
13
51
76
2
21
0
0.89
36856--36881
6
4.3
6
100
0
52
15
69
15
0
1.20
43510--43562
24
2.2
24
93
0
88
11
43
20
24
1.85
48007--48041
1
35.0
1
100
0
70
100
0
0
0
0.00

Tables:   1

The End!