genome.fa.s16744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016744.1 Corchorus olitorius cultivar O-4 contig16777, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35891

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--34	2	17.0	2	100	0	68	50	0	0	50	1.00
978--1021	23	2.0	23	86	4	63	40	13	29	15	1.86
1170--1209	18	2.1	20	86	9	57	35	20	25	20	1.96
2368--2401	16	2.1	17	88	5	52	67	0	14	17	1.23
2599--2808	22	9.4	22	74	11	178	21	21	13	42	1.87
5480--5506	2	13.5	2	100	0	54	51	0	0	48	1.00
6217--6251	18	1.9	18	94	0	61	54	22	5	17	1.64
6216--6257	18	2.3	18	83	0	57	59	19	4	16	1.54
6444--6480	18	2.1	18	100	0	74	40	10	10	37	1.75
12332--12404	37	2.0	37	94	0	128	28	13	23	34	1.93
12711--12755	22	2.0	22	100	0	90	42	35	8	13	1.75
13214--13264	23	2.2	23	100	0	102	39	3	23	33	1.73
16497--16526	15	2.0	15	100	0	60	53	0	0	46	1.00
18119--18198	40	2.0	40	87	0	115	35	18	5	41	1.73
19892--19969	41	1.9	41	86	5	113	50	12	10	26	1.73
19902--19997	41	2.3	41	87	3	131	48	13	12	25	1.77
22165--22215	22	2.3	22	89	0	75	47	17	21	13	1.82
22568--22664	27	3.6	27	71	2	97	39	27	16	16	1.90
22925--23376	22	20.9	22	70	14	203	37	15	9	37	1.80
23115--23161	23	2.0	23	95	0	85	44	19	2	34	1.62
23105--23266	82	2.0	83	81	1	191	36	17	6	39	1.76
22842--23349	22	23.5	22	68	13	148	37	15	9	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23431--23508	22	3.5	22	77	11	70	33	10	11	44	1.74
23535--23695	22	7.4	21	75	12	98	32	14	10	41	1.81
23530--23788	22	11.5	22	69	17	83	35	16	8	38	1.80
24165--24397	22	10.5	22	73	12	172	37	17	8	36	1.79
24192--24400	66	3.1	65	83	6	233	38	18	7	35	1.80
27616--27648	17	2.0	17	88	5	50	15	12	39	33	1.84
32978--33064	28	3.2	28	73	20	94	36	18	16	28	1.92

Tables:   1

The End!