Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016745.1 Corchorus olitorius cultivar O-4 contig16778, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8361
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:1066 original size:3 final size:3

Alignment explanation


    Indices: 1060--1106  Score: 94
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       1050 ATTCATTCAT

                                                                          
       1060 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       1107 GGAGTGGGTT


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   44  1.00

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (3 bp):   
TTA

Found at i:5767 original size:22 final size:23

Alignment explanation


    Indices: 5722--5768  Score: 60
    Period size: 22  Copynumber: 2.1  Consensus size: 23

       5712 TCATAAACAT

                       *       *   
       5722 TTTTCTTTTTTTATTCATTTTTC
          1 TTTTCTTTTTTGATTCATTATTC

                           *       
       5745 TTTTC-TTTTTGATTGATTATTC
          1 TTTTCTTTTTTGATTCATTATTC

              
       5767 TT
          1 TT

       5769 ATATCTACTA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  22   16  0.76
  23    5  0.24

ACGTcount: A:0.11, C:0.11, G:0.04, T:0.74


Consensus pattern (23 bp):   
TTTTCTTTTTTGATTCATTATTC
Done.