Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016747.1 Corchorus olitorius cultivar O-4 contig16780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45680

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
637--687
23
2.0
25
82
14
61
41
1
5
50
1.37
7268--7302
18
1.9
18
94
0
61
54
5
14
25
1.62
12345--12377
17
2.0
17
88
5
50
12
0
6
81
0.85
26045--26127
12
7.2
13
73
20
69
44
0
1
54
1.08
26044--26125
19
4.3
20
73
14
68
45
0
1
53
1.08
26044--26119
30
2.7
29
78
12
77
43
0
1
55
1.08
29788--30063
53
5.1
53
92
6
462
23
9
18
49
1.76
30404--30614
105
2.0
105
96
0
386
40
18
12
28
1.87
31969--32010
15
2.5
17
81
14
52
33
26
7
33
1.83
34244--34399
31
5.1
31
86
1
188
34
25
22
17
1.96
34249--34407
61
2.6
61
85
2
194
36
25
22
16
1.94
36538--36605
31
2.3
30
89
5
102
30
5
10
52
1.59
38231--38298
26
2.6
27
83
2
75
19
14
23
42
1.88
39292--39465
40
4.3
40
85
0
231
19
25
20
35
1.96
44943--45007
14
4.8
13
76
16
69
43
10
10
35
1.75

Tables:   1

The End!