Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016755.1 Corchorus olitorius cultivar O-4 contig16788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37997

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433--477
20
2.3
19
85
14
56
6
17
0
75
1.01
545--600
29
1.9
29
85
0
76
12
37
33
16
1.86
10153--10195
20
2.2
20
86
0
59
13
23
18
44
1.86
11792--11900
30
3.7
30
87
2
166
20
24
12
42
1.87
11771--11900
59
2.2
59
94
1
226
20
25
13
40
1.89
16365--16502
36
3.8
36
87
0
141
18
50
7
23
1.72
16449--16640
45
4.2
45
86
4
235
15
50
11
22
1.76
21145--21188
9
4.9
9
85
0
52
40
13
20
25
1.89
22730--22798
27
2.5
26
88
4
93
36
13
18
31
1.89
26817--26912
30
3.2
29
85
2
120
30
19
18
31
1.96
26814--26920
30
3.4
33
74
16
102
30
20
17
30
1.96
34128--34351
65
3.4
65
78
6
163
37
16
12
33
1.85
34121--34353
22
10.7
21
75
10
148
38
16
12
33
1.85
34365--34724
22
16.5
22
68
15
115
32
16
9
41
1.81
34486--34679
44
4.4
44
75
8
162
30
14
10
43
1.79
34603--34723
44
2.7
44
80
7
129
33
13
11
42
1.80
34559--34724
66
2.5
65
76
9
156
32
13
11
42
1.80

Tables:   1

The End!