Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016759.1 Corchorus olitorius cultivar O-4 contig16792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25196

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2939--3997
47
22.6
46
83
7
1042
47
5
20
27
1.72
2886--3998
186
5.9
185
79
10
1057
47
5
20
27
1.72
3961--4033
36
2.0
36
86
0
101
46
8
16
28
1.76
6577--6722
22
6.6
21
72
12
80
34
20
12
32
1.90
6591--6694
44
2.4
44
93
0
172
36
17
11
34
1.86
6595--6740
66
2.2
65
82
9
172
36
19
10
34
1.85
6592--6717
44
2.9
43
88
4
155
35
17
11
34
1.87
6595--6759
66
2.5
65
76
14
160
35
16
11
35
1.85
7000--7052
22
2.4
22
80
0
61
32
18
7
41
1.79
7079--7206
22
5.8
22
68
11
73
33
13
8
44
1.74
8211--8258
20
2.3
21
82
7
53
64
10
4
20
1.41
22557--22596
18
2.2
18
90
0
62
10
22
30
37
1.87
22565--22608
18
2.4
18
84
0
61
9
20
27
43
1.82
23101--23214
59
1.9
59
98
0
219
14
26
34
25
1.94
23105--23229
59
2.1
59
92
2
207
15
27
33
24
1.95

Tables:   1

The End!