Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016761.1 Corchorus olitorius cultivar O-4 contig16794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42390

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60--92
2
16.5
2
100
0
66
51
0
0
48
1.00
367--415
26
2.0
25
88
8
73
40
6
10
42
1.63
693--779
45
1.9
45
90
0
138
40
18
5
35
1.75
1714--1753
19
2.1
19
90
0
62
52
5
2
40
1.37
1976--2661
351
2.0
351
86
1
982
30
18
17
33
1.95
3477--3550
27
2.7
27
87
0
103
28
18
29
22
1.98
3691--3720
15
2.0
15
93
0
51
50
33
10
6
1.62
4652--4702
26
2.0
26
100
0
102
39
3
3
52
1.38
8812--8889
29
2.6
31
79
4
79
19
23
14
43
1.87
12284--12407
61
2.0
61
92
0
203
29
8
25
36
1.86
13415--13700
41
6.8
42
79
9
291
41
26
10
20
1.85
13416--13710
83
3.5
84
89
5
445
40
27
10
22
1.85
19488--19555
25
2.7
25
90
0
109
22
13
45
19
1.84
26912--26936
2
12.5
2
100
0
50
52
0
0
48
1.00
31730--31842
56
2.0
55
91
1
181
37
23
0
38
1.61
31739--31859
55
2.2
56
85
4
156
42
19
0
38
1.57
31908--31986
42
1.9
40
94
5
140
29
7
15
48
1.72
39794--39839
3
15.3
3
100
0
92
32
0
0
67
0.91
40803--41048
130
1.9
123
88
5
366
47
1
10
39
1.48
40803--41056
123
2.0
127
87
5
372
48
1
10
38
1.47
42015--42052
2
18.5
2
94
5
67
50
2
0
47
1.15
42268--42348
39
2.0
40
90
2
128
50
7
3
38
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42339--42383
25
1.9
22
86
13
63
31
6
8
53
1.58

Tables:   1

The End!