Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016764.1 Corchorus olitorius cultivar O-4 contig16797, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83277

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4519--4598
31
2.6
31
95
0
142
33
21
17
27
1.96
9802--9860
29
2.0
29
83
6
75
35
11
5
47
1.62
14976--15012
7
5.3
7
100
0
74
0
27
29
43
1.55
20820--20960
31
4.6
31
80
10
121
29
21
12
36
1.91
21103--21143
12
3.5
12
83
9
50
60
21
7
9
1.52
21111--21148
12
3.2
12
85
7
51
60
21
10
7
1.54
21220--21296
29
2.5
31
85
6
113
28
11
28
31
1.92
27064--27144
42
1.9
42
87
5
119
33
23
18
24
1.97
35218--35242
8
3.1
8
100
0
50
24
28
0
48
1.52
36195--36387
41
4.7
41
82
5
221
34
15
16
34
1.90
36424--36453
15
1.9
16
93
6
53
63
10
6
20
1.47
36789--36819
16
1.9
16
93
0
53
29
6
12
51
1.65
37840--37877
16
2.3
17
81
9
51
47
0
0
52
1.00
37840--37877
17
2.3
17
86
4
51
47
0
0
52
1.00
57678--57706
6
5.0
6
95
4
51
0
13
0
86
0.58
59114--59147
17
2.0
17
100
0
68
29
41
0
29
1.57
59481--59632
39
3.9
39
92
1
252
35
12
3
48
1.60
61955--61987
12
2.8
12
100
0
66
60
0
15
24
1.35
64169--64196
3
9.3
3
100
0
56
35
0
32
32
1.58
64193--64233
18
2.3
18
100
0
82
51
4
7
36
1.51
64696--65142
178
2.5
176
82
5
495
38
17
12
31
1.87
68473--68538
32
2.1
32
82
2
80
42
4
9
43
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69128--69414
134
2.2
131
90
5
445
37
9
2
50
1.49
69565--69624
31
1.9
31
86
6
86
8
20
31
40
1.82
77001--77045
5
9.2
5
95
4
83
0
0
20
80
0.72
77004--77049
19
2.5
19
96
3
85
0
0
19
80
0.71
77001--77049
24
2.1
23
96
3
89
0
0
20
79
0.73
77758--77838
32
2.6
31
76
9
83
23
12
30
33
1.92
79372--79433
20
3.2
20
68
13
58
27
1
22
48
1.60
83243--83277
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!