Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016769.1 Corchorus olitorius cultivar O-4 contig16802, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3897
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31


Found at i:553 original size:21 final size:21

Alignment explanation


    Indices: 510--558  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        500 GTCTTGGAAT

                *            **  
        510 GGTGATGGCACGGGCATGGCC
          1 GGTGGTGGCACGGGCATAACC

                           *     
        531 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                   
        552 GGTGGTG
          1 GGTGGTG

        559 TGGCAATCGG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.12, C:0.20, G:0.49, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.