Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001677.1 Corchorus olitorius cultivar O-4 contig01677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29


Found at i:941 original size:20 final size:20

Alignment explanation


    Indices: 888--943  Score: 60
    Period size: 21  Copynumber: 2.8  Consensus size: 20

        878 CCGAGAAATC

                                *
        888 AAAAAACCAGCTCCTGCAGCT
          1 AAAAAACCAGCTCC-GCAGCA

                   **           
        909 AAAAAACTTGCTCCGC-GCA
          1 AAAAAACCAGCTCCGCAGCA

                            
        928 AAAAAACCAAGCTCCG
          1 AAAAAACC-AGCTCCG

        944 TGCTTATTTT


Statistics
Matches: 29,  Mismatches: 5, Indels: 3
        0.78            0.14        0.08

Matches are distributed among these distances:
  19    9  0.31
  20    8  0.28
  21   12  0.41

ACGTcount: A:0.41, C:0.32, G:0.14, T:0.12


Consensus pattern (20 bp):   
AAAAAACCAGCTCCGCAGCA
Done.