Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016772.1 Corchorus olitorius cultivar O-4 contig16805, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17499
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:1718 original size:19 final size:18

Alignment explanation


    Indices: 1685--1721  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       1675 TGGAAATAAT

                              
       1685 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *         
       1703 TCTTCAAATTGTCTTCAAA
          1 TCTTC-AATGGTCTTCAAA

       1722 CACGAACTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA
Done.