Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016773.1 Corchorus olitorius cultivar O-4 contig16806, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2802
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Found at i:2634 original size:162 final size:162
Alignment explanation
Indices: 2367--2688 Score: 617
Period size: 162 Copynumber: 2.0 Consensus size: 162
2357 AAGCTAGTGA
2367 CAAGGAAGCAAAGCATCTTCAACAGATTGCGGAGTTGAAAGAGCAGAATGTTAAACTTCACTTGG
1 CAAGGAAGCAAAGCATCTTCAACAGATTGCGGAGTTGAAAGAGCAGAATGTTAAACTTCACTTGG
*
2432 AAAAGGCCGAAGAGATTCTCAAGGGAAGTCAGTTACAAGCAAAGTTGAAGGGGGTTGAGAAAGAA
66 AAAAGGCCGAAGAGATTCTCAAGGGAAGTCAGTTACAAGCAAAGCTGAAGGGGGTTGAGAAAGAA
2497 CTGAAGCTCTTCAAAGAATCCAATAAGCTCTT
131 CTGAAGCTCTTCAAAGAATCCAATAAGCTCTT
*
2529 CAAGGAAGCAAAGCATCTTTAACAGATTGCGGAGTTGAAAGAGCAGAATGTTAAACTTCACTTGG
1 CAAGGAAGCAAAGCATCTTCAACAGATTGCGGAGTTGAAAGAGCAGAATGTTAAACTTCACTTGG
*
2594 AAAAGGCCGAAGAGGTTCTCAAGGGAAGTCAGTTACAAGCAAAGCTGAAGGGGGTTGAGAAAGAA
66 AAAAGGCCGAAGAGATTCTCAAGGGAAGTCAGTTACAAGCAAAGCTGAAGGGGGTTGAGAAAGAA
2659 CTGAAGCTCTTCAAAGAATCCAATAAGCTC
131 CTGAAGCTCTTCAAAGAATCCAATAAGCTC
2689 AATAAGGATG
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
162 157 1.00
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (162 bp):
CAAGGAAGCAAAGCATCTTCAACAGATTGCGGAGTTGAAAGAGCAGAATGTTAAACTTCACTTGG
AAAAGGCCGAAGAGATTCTCAAGGGAAGTCAGTTACAAGCAAAGCTGAAGGGGGTTGAGAAAGAA
CTGAAGCTCTTCAAAGAATCCAATAAGCTCTT
Done.