Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016787.1 Corchorus olitorius cultivar O-4 contig16820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32795

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--43
2
21.5
2
100
0
86
0
0
48
51
1.00
69--114
19
2.4
19
88
0
65
21
36
30
10
1.88
3047--3090
21
2.0
22
86
4
63
38
6
9
45
1.63
6479--6512
14
2.4
14
95
0
59
5
8
0
85
0.75
8635--8671
19
1.9
19
88
0
56
54
35
0
10
1.36
8636--8675
13
3.1
13
85
7
55
50
35
0
15
1.44
10363--10396
5
6.8
5
100
0
68
0
20
0
79
0.73
11202--11242
13
3.2
13
78
0
55
63
0
0
36
0.95
18592--18638
22
2.2
21
92
3
76
70
12
4
12
1.31
18930--18954
11
2.3
11
100
0
50
92
0
8
0
0.40
21653--21701
24
2.0
24
100
0
98
24
12
24
38
1.90
26487--26515
9
3.2
9
100
0
58
44
10
31
13
1.78
30376--30427
25
2.1
25
92
0
86
26
23
9
40
1.85

Tables:   1

The End!