Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016789.1 Corchorus olitorius cultivar O-4 contig16822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1685
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32


Found at i:1659 original size:16 final size:16

Alignment explanation


    Indices: 1640--1671  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1630 AAATAAAAAT

                   *        
       1640 CAAAAAAGGAAAAAGA
          1 CAAAAAAAGAAAAAGA

                            
       1656 CAAAAAAAGAAAAAGA
          1 CAAAAAAAGAAAAAGA

       1672 AATTTGATTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00


Consensus pattern (16 bp):   
CAAAAAAAGAAAAAGA
Done.