Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016791.1 Corchorus olitorius cultivar O-4 contig16824, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17117
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:874 original size:19 final size:18

Alignment explanation


    Indices: 841--876  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        831 TTGAGATAAT

                              
        841 TCTTCAATGATCTTCAAG
          1 TCTTCAATGATCTTCAAG

                     *        
        859 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

        877 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.31, C:0.22, G:0.06, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAG

Found at i:12346 original size:22 final size:24

Alignment explanation


    Indices: 12311--12364  Score: 60
    Period size: 22  Copynumber: 2.3  Consensus size: 24

      12301 ATAAATGTTG

                            *      *
      12311 CTGATAA-TCTTCT-CTTTTATCT
          1 CTGATAATTCTTCTCCATTTATCA

                                    
      12333 CTGATAATTC-TCTCCATTTATCA
          1 CTGATAATTCTTCTCCATTTATCA

                     
      12356 CTTGATAAT
          1 C-TGATAAT

      12365 ATCTAGTCAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  22   10  0.37
  23   10  0.37
  24    7  0.26

ACGTcount: A:0.24, C:0.22, G:0.06, T:0.48


Consensus pattern (24 bp):   
CTGATAATTCTTCTCCATTTATCA
Done.