Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016792.1 Corchorus olitorius cultivar O-4 contig16825, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44241

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1256--1456
28
6.5
32
78
17
212
32
15
15
36
1.89
1223--1456
62
3.7
61
89
6
337
31
16
15
36
1.90
1815--1868
22
2.3
24
81
12
60
24
22
5
48
1.72
3452--3589
50
2.8
50
86
7
185
45
5
19
28
1.73
6935--7018
20
4.2
20
86
3
109
25
10
22
41
1.86
6944--7020
40
1.9
40
89
5
120
25
11
23
38
1.89
11681--11764
20
4.2
20
89
3
109
23
10
23
41
1.86
24865--24964
27
3.7
27
87
2
128
18
17
27
38
1.92
27914--27946
17
2.0
17
94
5
59
39
0
0
60
0.97
33682--33728
18
2.7
17
80
3
58
44
23
6
25
1.77
38600--38643
23
1.9
23
95
0
79
38
15
4
40
1.68
39379--39452
31
2.4
30
78
8
78
35
14
18
31
1.92
39936--40023
37
2.4
37
92
1
142
55
23
10
10
1.64
40042--40068
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!