Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016816.1 Corchorus olitorius cultivar O-4 contig16849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32949

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7082--7171
16
5.6
16
74
11
58
41
11
0
47
1.39
8527--8798
43
6.3
43
71
14
141
37
7
16
38
1.77
8528--8798
22
12.6
21
75
10
210
37
7
16
38
1.77
8571--8798
108
2.1
107
81
9
268
37
7
17
38
1.77
9293--9345
26
2.0
26
92
0
88
20
18
5
54
1.64
9472--9550
27
3.0
26
83
3
95
15
21
3
59
1.51
9542--9619
35
2.2
36
84
6
106
25
17
2
53
1.56
9553--9620
35
1.9
35
90
0
109
29
16
1
52
1.52
9755--9834
20
3.9
20
73
11
72
20
23
5
51
1.67
9691--9837
41
3.5
41
81
4
152
20
23
5
51
1.68
9819--9875
7
8.1
7
78
7
53
17
24
3
54
1.59
9819--9897
21
3.8
22
77
9
67
18
24
5
51
1.66
9833--10007
21
8.8
20
73
14
96
21
22
5
50
1.70
9858--9972
35
3.1
35
73
16
113
21
20
6
51
1.69
9881--10007
21
6.1
21
80
8
100
22
21
6
50
1.71
10046--10499
26
17.3
26
88
3
553
29
20
0
49
1.52
11228--11264
19
2.0
19
89
5
58
35
0
0
64
0.94
14462--14512
25
2.0
25
100
0
102
47
11
17
23
1.81
14828--14891
22
2.9
22
86
9
94
32
6
20
40
1.77
14945--15011
22
3.1
21
76
16
66
43
5
11
38
1.66
22833--22879
23
2.0
23
95
0
85
12
31
4
51
1.59
22996--23042
23
2.0
23
95
0
85
12
31
4
51
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22831--23159
163
2.0
163
100
0
658
27
18
10
42
1.84
31753--31794
20
2.1
20
86
0
57
30
30
19
19
1.96

Tables:   1

The End!