Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016818.1 Corchorus olitorius cultivar O-4 contig16851, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4328
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:2511 original size:21 final size:21

Alignment explanation


    Indices: 2487--2537  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       2477 TGCTAGGAGA

                    *            
       2487 TCATTGGAGAAGGATCCAAGC
          1 TCATTGGAAAAGGATCCAAGC

                         * *     
       2508 TCATTGGAAAAGGTTTCAAGC
          1 TCATTGGAAAAGGATCCAAGC

                     
       2529 TCATTGGAA
          1 TCATTGGAA

       2538 TTGTCTAAGA


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25


Consensus pattern (21 bp):   
TCATTGGAAAAGGATCCAAGC
Done.