Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001682.1 Corchorus olitorius cultivar O-4 contig01682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7386
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34


Found at i:6520 original size:18 final size:18

Alignment explanation


    Indices: 6497--6534  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       6487 TATTTCAATT

                               
       6497 AACTAA-TAGACTAAACTA
          1 AACTAACTA-ACTAAACTA

                      *       
       6515 AACTAACTAATTAAACTA
          1 AACTAACTAACTAAACTA

              
       6533 AA
          1 AA

       6535 TAAATAGGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18   16  0.89
  19    2  0.11

ACGTcount: A:0.58, C:0.16, G:0.03, T:0.24


Consensus pattern (18 bp):   
AACTAACTAACTAAACTA

Found at i:6760 original size:18 final size:19

Alignment explanation


    Indices: 6728--6764  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       6718 TTTACTCACC

                      *        
       6728 CAATCAAATTCATTAAGCT
          1 CAATCAAATTAATTAAGCT

                               
       6747 CAATC-AATTAATTAAGCT
          1 CAATCAAATTAATTAAGCT

       6765 ATCACATAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   12  0.71
  19    5  0.29

ACGTcount: A:0.43, C:0.19, G:0.05, T:0.32


Consensus pattern (19 bp):   
CAATCAAATTAATTAAGCT
Done.