Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016823.1 Corchorus olitorius cultivar O-4 contig16856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20213

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
525--594
21
3.3
21
91
0
95
11
21
48
18
1.79
3612--3643
15
2.1
16
94
5
57
78
12
3
6
1.06
4128--4167
15
2.6
16
88
4
64
67
12
5
15
1.38
10542--10646
38
2.8
38
86
5
142
47
7
17
27
1.74
11516--11555
19
2.2
18
86
4
53
30
20
5
45
1.72
11868--11995
22
5.8
23
77
13
101
36
14
7
42
1.72
11916--11982
23
3.0
21
77
14
64
38
14
7
38
1.75
11916--11995
21
3.7
21
80
8
72
36
15
6
42
1.72
12259--12348
45
2.0
45
91
0
144
31
15
12
41
1.84
13715--13786
32
2.2
32
95
0
126
30
4
22
43
1.72
13779--13814
19
1.9
18
88
5
54
44
2
22
30
1.67

Tables:   1

The End!