Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016824.1 Corchorus olitorius cultivar O-4 contig16857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27007

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
599--636
18
2.0
20
90
10
62
63
13
13
10
1.53
3269--3444
88
1.9
91
89
5
277
37
10
33
18
1.85
6031--6089
2
29.5
2
83
6
75
45
1
1
50
1.21
6032--6086
18
2.9
18
91
5
83
43
1
1
52
1.22
6029--6095
22
3.1
21
77
12
73
44
2
4
47
1.38
7613--7662
7
8.2
6
81
14
50
0
12
16
72
1.13
12173--12228
26
2.2
26
100
0
112
32
0
17
50
1.47
12948--13007
28
2.1
28
100
0
120
31
33
0
35
1.58
15852--15900
11
4.8
11
80
12
52
38
8
20
32
1.82
17258--17297
15
2.6
16
96
4
73
15
7
10
67
1.41
20866--20891
11
2.4
11
100
0
52
7
15
7
69
1.35
24037--24177
69
2.0
69
84
2
185
29
5
36
28
1.80
24519--24750
114
2.0
114
98
0
446
28
18
11
40
1.86
25938--25974
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!