Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016827.1 Corchorus olitorius cultivar O-4 contig16860, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35145

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7995--8021
13
2.1
13
100
0
54
29
7
25
37
1.83
12641--12692
21
2.5
21
90
6
79
30
5
28
34
1.81
14113--14141
14
2.1
14
100
0
58
44
13
0
41
1.44
26797--26839
22
2.0
22
90
0
68
23
32
23
20
1.98
28525--28551
10
2.7
10
100
0
54
59
0
11
29
1.32
28625--28658
15
2.3
15
100
0
68
67
0
11
20
1.21
28640--28719
32
2.7
29
81
11
115
56
3
21
18
1.57
32134--32268
29
4.6
29
74
9
121
21
19
21
37
1.94
32128--32239
58
1.9
58
87
5
163
22
19
20
37
1.94
34875--34932
29
2.0
29
83
6
73
29
22
10
37
1.87

Tables:   1

The End!