Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001683.1 Corchorus olitorius cultivar O-4 contig01683, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1501
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:808 original size:19 final size:20

Alignment explanation


    Indices: 770--820  Score: 59
    Period size: 19  Copynumber: 2.5  Consensus size: 20

        760 TAATAATCCC

                                 
        770 ATCTGTACAGTACCTAATCTA
          1 ATCTGTACAGTA-CTAATCTA

                        *      *
        791 ATCTGTACAGT-GTAATCTC
          1 ATCTGTACAGTACTAATCTA

              *        
        810 ATATGTACAGT
          1 ATCTGTACAGT

        821 TGCTAAATAG


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  19   16  0.59
  21   11  0.41

ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35


Consensus pattern (20 bp):   
ATCTGTACAGTACTAATCTA
Done.