Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016834.1 Corchorus olitorius cultivar O-4 contig16867, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30437

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4710--4752
22
2.0
22
90
0
68
23
32
23
20
1.98
15255--15503
121
2.1
121
98
0
480
23
13
22
40
1.89
17235--17334
45
2.2
45
96
0
182
41
24
12
23
1.88
18979--19140
60
2.7
60
89
1
245
36
17
18
27
1.94
19181--19348
31
5.5
31
71
19
149
26
18
20
34
1.96
19180--19344
60
2.8
60
96
0
294
26
18
20
35
1.95
19212--19313
29
3.5
28
73
15
98
27
18
19
34
1.95
19534--19567
2
16.0
2
88
11
50
47
2
2
47
1.32
19534--19567
11
3.2
10
88
12
50
47
2
2
47
1.32
19535--19567
13
2.5
13
95
0
57
45
3
3
48
1.33
22556--22598
20
2.2
20
100
0
86
18
32
18
30
1.95
26147--26270
65
1.9
65
91
0
203
28
20
16
34
1.94

Tables:   1

The End!