Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016840.1 Corchorus olitorius cultivar O-4 contig16873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10701

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105--179
28
2.7
27
80
8
80
38
13
21
26
1.90
928--1001
23
3.1
21
71
21
58
5
18
0
75
0.99
944--989
21
2.1
21
84
4
56
0
21
0
78
0.76
936--1002
25
2.7
24
81
9
80
4
17
0
77
0.93
940--1000
24
2.6
23
76
16
63
3
19
0
77
0.91
5994--6046
12
4.4
13
81
11
60
45
9
5
39
1.60
7271--7343
22
3.2
22
75
21
78
4
16
0
79
0.88
7293--7339
19
2.5
19
75
24
55
2
19
0
78
0.85
10399--10517
2
59.5
2
91
0
184
0
4
48
46
1.27
10593--10628
2
18.0
2
88
0
54
0
5
50
44
1.25
10593--10627
10
3.5
10
96
0
61
0
5
51
42
1.25
10485--10688
111
1.8
111
98
0
399
19
9
30
40
1.83

Tables:   1

The End!