genome.fa.s16842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016842.1 Corchorus olitorius cultivar O-4 contig16875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84949

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3518--3561	2	22.5	2	81	4	54	45	0	54	0	0.99
3518--3560	12	3.7	12	87	3	61	44	0	55	0	0.99
16464--16488	12	2.1	12	100	0	50	40	0	40	20	1.52
17734--17777	15	2.8	15	93	6	70	61	13	0	25	1.32
17728--17777	17	3.1	17	88	11	86	62	12	0	26	1.30
17728--17778	15	3.3	15	78	10	66	60	11	0	27	1.31
17726--17828	13	7.2	13	75	18	64	58	14	0	27	1.37
27601--27714	56	2.0	56	94	0	201	40	0	23	35	1.61
29729--30059	43	7.8	42	82	8	413	41	24	10	23	1.86
29729--30060	84	3.9	84	93	2	560	41	24	10	23	1.86
43988--44301	149	2.1	151	92	3	524	21	18	19	39	1.92
45369--45576	107	1.9	107	92	1	346	18	21	13	46	1.83
45581--45697	57	2.1	56	95	1	207	33	23	1	41	1.65
45592--45710	57	2.1	57	88	3	177	40	20	1	37	1.62
63720--63755	17	2.1	17	89	0	54	30	11	19	38	1.86
76494--76568	37	2.0	37	92	0	123	37	20	16	26	1.93
77072--77188	42	2.8	42	96	1	207	29	29	17	24	1.97
77157--77444	35	8.2	35	92	1	436	28	22	17	31	1.97
77481--77995	50	10.3	50	93	0	841	38	18	15	28	1.91
77975--78391	35	12.4	35	73	13	247	36	21	22	19	1.95
78006--78263	131	2.0	131	85	1	347	36	21	22	19	1.96
77975--78464	166	3.0	166	82	3	567	37	21	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78205--78397	96	2.0	96	82	6	230	39	20	21	19	1.93
78336--78437	35	2.9	35	83	2	116	43	18	17	20	1.89
78170--78432	131	2.0	131	88	0	391	40	19	20	19	1.92
79504--79546	12	3.7	12	78	3	52	13	13	0	72	1.13
82287--82312	9	2.9	9	100	0	52	80	11	0	7	0.89

Tables:   1

The End!