Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016843.1 Corchorus olitorius cultivar O-4 contig16876, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11155
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28


Found at i:2076 original size:32 final size:32

Alignment explanation


    Indices: 1988--2063  Score: 152
    Period size: 32  Copynumber: 2.4  Consensus size: 32

       1978 ATATTTTAAA

                                            
       1988 GGGCTTGGACAAGAATTTTAAGCCCATTGGAT
          1 GGGCTTGGACAAGAATTTTAAGCCCATTGGAT

                                            
       2020 GGGCTTGGACAAGAATTTTAAGCCCATTGGAT
          1 GGGCTTGGACAAGAATTTTAAGCCCATTGGAT

                        
       2052 GGGCTTGGACAA
          1 GGGCTTGGACAA

       2064 AAATATCAAG


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   44  1.00

ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26


Consensus pattern (32 bp):   
GGGCTTGGACAAGAATTTTAAGCCCATTGGAT

Found at i:10967 original size:21 final size:20

Alignment explanation


    Indices: 10934--10973  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

      10924 AAGAAATGTA

                    *            
      10934 ATAGCCTTTTCAAAAGTTTCC
          1 ATAGCCTTATC-AAAGTTTCC

                *              
      10955 ATAGGCTTATCAAAGTTTC
          1 ATAGCCTTATCAAAGTTTC

      10974 TAAAGACTAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    8  0.47
  21    9  0.53

ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38


Consensus pattern (20 bp):   
ATAGCCTTATCAAAGTTTCC
Done.