Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016847.1 Corchorus olitorius cultivar O-4 contig16880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24748
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:2479 original size:7 final size:7
Alignment explanation
Indices: 2467--2491 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2457 CTGTTCCTTT
2467 TTCAGCA
1 TTCAGCA
2474 TTCAGCA
1 TTCAGCA
2481 TTCAGCA
1 TTCAGCA
2488 TTCA
1 TTCA
2492 CGTGCATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (7 bp):
TTCAGCA
Found at i:7095 original size:36 final size:36
Alignment explanation
Indices: 7046--7372 Score: 312
Period size: 36 Copynumber: 9.3 Consensus size: 36
7036 GCTTTAGTTC
* *
7046 ATTTCAGTTGATCCAAGGCGATCTTTTATTCAATTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* *
7082 ATTTCAGTCGATCCAGGGCGATCTTTCCTTCAATTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* * * * * *
7118 ATTTTAGCTGACCCAGGGCGGTC-ATTCTTCAAGTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* * *
7153 ATTTCAGTTGACCCAGGGCGGTC-TTTCTTCAATTC
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* * * *
7188 ATTTCAATTGATCCAGGTCGATC-TTACTTCAAGTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* * *
7223 ATTTTAGTTGATCCAGGGCGATCGTTTCTTCAGTTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
7259 A---C--TTGA-CACAGGGCGATCTTTTCTTCAATTT
1 ATTTCAGTTGATC-CAGGGCGATCTTTTCTTCAATTT
* * ** *
7290 ATTTCAATGGATCCAGGGTAATCTTTTCTTCAGTTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
* ** * *
7326 ATTTCAATTGATCCAGGATGATCTTTTCTGCAGTTT
1 ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
7362 ATTTCAGTTGA
1 ATTTCAGTTGA
7373 CCGCAAATTG
Statistics
Matches: 241, Mismatches: 42, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
30 1 0.00
31 26 0.11
34 1 0.00
35 87 0.36
36 125 0.52
37 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41
Consensus pattern (36 bp):
ATTTCAGTTGATCCAGGGCGATCTTTTCTTCAATTT
Found at i:7224 original size:70 final size:70
Alignment explanation
Indices: 7043--7372 Score: 257
Period size: 70 Copynumber: 4.7 Consensus size: 70
7033 GATGCTTTAG
* *
7043 TTCATTTCAGTTGATCCAAGGCGATCTTTTA-TTCAATTTATTTCAGTCGATCCAGGGCGATCTT
1 TTCATTTCAGTTGATCC-AGGCGATC-TTTACTTCAAGTTATTTCAGTTGATCCAGGGCGATCTT
7107 TCCTTCAA
64 T-CTTCAA
* * * * * * * *
7115 TTTATTTTAGCTGACCCAGGGCGGTCATT-CTTCAAGTTATTTCAGTTGACCCAGGGCGGTCTTT
1 TTCATTTCAGTTGATCCA-GGCGATCTTTACTTCAAGTTATTTCAGTTGATCCAGGGCGATCTTT
7179 CTTCAA
65 CTTCAA
* *
7185 TTCATTTCAATTGATCCAGGTCGATC-TTACTTCAAGTTATTTTAGTTGATCCAGGGCGATCGTT
1 TTCATTTCAGTTGATCCAGG-CGATCTTTACTTCAAGTTATTTCAGTTGATCCAGGGCGATC-TT
7249 TCTTC-A
64 TCTTCAA
* * * * * * **
7255 ---GTTT-ACTTGA-CACAGGGCGATCTTTTCTTCAATTTATTTCAATGGATCCAGGGTAATCTT
1 TTCATTTCAGTTGATC-CA-GGCGATCTTTACTTCAAGTTATTTCAGTTGATCCAGGGCGATC-T
*
7315 TTCTTCAG
63 TTCTTCAA
* * * * *
7323 TTTATTTCAATTGATCCAGGATGATCTTTTCTGC-AGTTTATTTCAGTTGA
1 TTCATTTCAGTTGATCCAGG-CGATCTTTACTTCAAG-TTATTTCAGTTGA
7373 CCGCAAATTG
Statistics
Matches: 205, Mismatches: 37, Indels: 32
0.75 0.14 0.12
Matches are distributed among these distances:
65 1 0.00
66 12 0.06
67 40 0.20
69 4 0.02
70 53 0.26
71 46 0.22
72 48 0.23
73 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.41
Consensus pattern (70 bp):
TTCATTTCAGTTGATCCAGGCGATCTTTACTTCAAGTTATTTCAGTTGATCCAGGGCGATCTTTC
TTCAA
Found at i:7625 original size:30 final size:30
Alignment explanation
Indices: 7583--8361 Score: 963
Period size: 30 Copynumber: 26.3 Consensus size: 30
7573 ACTATTCTAC
7583 ATCATTGCTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * *
7613 ATCGTCGCTTTATTTTAATCCTGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* ** *
7643 ATCGTCACTTTATTTTAATCCTGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
7673 ATCGTTGCTTTATTTTAATCCTGGTTAAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * *
7703 ATCATCGCCTTCTTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * *
7733 ATTATTGC-TT-TCTT-ATCCTGATTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
7760 ATCATTGCTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
7790 ATCATTGCTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
7820 ATTATTGC-TT-TCTT-ATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
7847 ATCATTGCTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * ** *
7877 ATCATTGTTTTATCTTAATATTGGTCGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
7907 ATCGTTGCCTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
7937 ATTATTGC-TT-TCTT-ATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
7964 ATCATTGCTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * *
7994 ATCATTGTTTTATCTTAATCCTGGTCGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
8024 ATCGTTGCCTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
8054 ATTATTGC-TT-TCTT-ATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
8081 ATCATTGCTTCATTTTTTATCCTGGTTGAGG
1 ATCATTGCTTTA-TTTTAATCCTGGTTGAGG
* *
8112 ATAATTGCTTCATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
8142 ATCGTTACTTTATTTTAATCCTGGTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * * *
8172 ATCGTTGCTTTATTTTTATCATGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* *
8202 ATCATTGCTTTATTTTAGTCCTGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
*
8232 ATCATTGCTTTATTTTAATCCTGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
*
8262 ATCATTG-TTTCATTTTAATCCTGTTTGAGG
1 ATCATTGCTTT-ATTTTAATCCTGGTTGAGG
* * *
8292 ATCATTGTTTTATTTTAGTCCTGTTTGAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
* * * *
8322 ATAATTGCTCTATTTTTATCCTGGTTTAGG
1 ATCATTGCTTTATTTTAATCCTGGTTGAGG
8352 ATCATTGCTT
1 ATCATTGCTT
8362 CATCAGTTAA
Statistics
Matches: 654, Mismatches: 80, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
27 79 0.12
28 19 0.03
29 20 0.03
30 509 0.78
31 27 0.04
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (30 bp):
ATCATTGCTTTATTTTAATCCTGGTTGAGG
Found at i:7792 original size:117 final size:116
Alignment explanation
Indices: 7583--8361 Score: 952
Period size: 117 Copynumber: 6.6 Consensus size: 116
7573 ACTATTCTAC
* * * *
7583 ATCATTGCTTTATTTTAATCCTGGTTGAGGATCGTCGCTTTATTTTAATCCTGTTTGAGGATCGT
1 ATCATTGC-TT-TTTT-ATCCTGGTTGAGGATCATTGCTTTATTTT-ATCCTGGTTGAGGATCAT
** * *
7648 CACTTTATTTTAATCCTGTTTGAGGATCGTTGCTTTATTTTAATCCTGGTTAAGG
62 TGCTTTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
* * * *
7703 ATCATCGCCTTCTTTTAATCCTGGTTGAGGATTATTGC-TT-TCTTATCCTGATTGAGGATCATT
1 ATCATTG-CTT-TTTT-ATCCTGGTTGAGGATCATTGCTTTATTTTATCCTGGTTGAGGATCATT
*
7766 GCTTTATTTTAATCCTGGTTGAGGATCATTGCTTTATTTTAATCCTGGTTGAGG
63 GCTTTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
* * *
7820 ATTATTGCTTTCTTATCCTGGTTGAGGATCATTGCTTTATTTTAATCCTGGTTGAGGATCATTGT
1 ATCATTGCTTTTTTATCCTGGTTGAGGATCATTGCTTTATTTT-ATCCTGGTTGAGGATCATTGC
* ** * *
7885 TTTATCTTAATATTGGTCGAGGATCGTTGCCTTATTTTAATCCTGGTTGAGG
65 TTTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
* * *
7937 ATTATTGCTTTCTTATCCTGGTTGAGGATCATTGCTTTATTTTAATCCTGGTTGAGGATCATTGT
1 ATCATTGCTTTTTTATCCTGGTTGAGGATCATTGCTTTATTTT-ATCCTGGTTGAGGATCATTGC
* * *
8002 TTTATCTTAATCCTGGTCGAGGATCGTTGCCTTATTTTAATCCTGGTTGAGG
65 TTTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
* * * *
8054 ATTATTGCTTTCTTATCCTGGTTGAGGATCATTGCTTCATTTTTTATCCTGGTTGAGGATAATTG
1 ATCATTGCTTTTTTATCCTGGTTGAGGATCATTGCTT--TATTTTATCCTGGTTGAGGATCATTG
* *
8119 CTTCATTTTAATCCTGGTTGAGGATCGTTACTTTATTTTAATCCTGGTTGAGG
64 CTTTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
* * * *
8172 ATCGTTGCTTTATTTTTATCATGTTTGAGGATCATTGCTTTATTTTAGTCCTGTTTGAGGATCAT
1 ATCATTGC--T-TTTTTATCCTGGTTGAGGATCATTGCTTTATTTTA-TCCTGGTTGAGGATCAT
* * *
8237 TGCTTTATTTTAATCCTGTTTGAGGATCATTG-TTTCATTTTAATCCTGTTTGAGG
62 TGCTTTATTTTAATCCTGGTTGAGGATCGTTGCTTT-ATTTTAATCCTGGTTGAGG
* * * * *
8292 ATCATTGTTTTATTTTAGTCCTGTTTGAGGATAATTGCTCTATTTTTATCCTGGTTTAGGATCAT
1 ATCATTG-CTT-TTTTA-TCCTGGTTGAGGATCATTGCTTTA-TTTTATCCTGGTTGAGGATCAT
8357 TGCTT
62 TGCTT
8362 CATCAGTTAA
Statistics
Matches: 588, Mismatches: 56, Indels: 30
0.87 0.08 0.04
Matches are distributed among these distances:
114 20 0.03
115 5 0.01
116 6 0.01
117 288 0.49
118 76 0.13
119 22 0.04
120 140 0.24
121 31 0.05
ACGTcount: A:0.19, C:0.14, G:0.20, T:0.47
Consensus pattern (116 bp):
ATCATTGCTTTTTTATCCTGGTTGAGGATCATTGCTTTATTTTATCCTGGTTGAGGATCATTGCT
TTATTTTAATCCTGGTTGAGGATCGTTGCTTTATTTTAATCCTGGTTGAGG
Found at i:8419 original size:32 final size:32
Alignment explanation
Indices: 8339--8421 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 32
8329 CTCTATTTTT
* *
8339 ATCCTGGTTTAGGATCATTGCTTCATCAGTTA
1 ATCCTGATTTAGGATTATTGCTTCATCAGTTA
* ** * *
8371 ATCCCGACGTAAGATTATTGCATT-ATGAGTTA
1 ATCCTGATTTAGGATTATTGC-TTCATCAGTTA
8403 ATCCTGATTTAGGATTATT
1 ATCCTGATTTAGGATTATT
8422 ACTTTAGTTT
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
32 37 0.95
33 2 0.05
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (32 bp):
ATCCTGATTTAGGATTATTGCTTCATCAGTTA
Found at i:14770 original size:16 final size:16
Alignment explanation
Indices: 14749--14781 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14739 GAATCAACTA
14749 ATACCACTTTAAAGTG
1 ATACCACTTTAAAGTG
*
14765 ATACCATTTTAAAGTG
1 ATACCACTTTAAAGTG
14781 A
1 A
14782 ACTAAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (16 bp):
ATACCACTTTAAAGTG
Found at i:15358 original size:40 final size:40
Alignment explanation
Indices: 15313--15567 Score: 277
Period size: 40 Copynumber: 6.5 Consensus size: 40
15303 CCAATAAGGA
** *
15313 AATGATCCTGAATAAAATTTTGAAATTGATCTGATAAAGC
1 AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
* * *
15353 AATGATCCTGCATAGGATTCTGAAATTCA-CTTGATAAAGC
1 AATGATCCTGAATAGGATTTTGAAATTAATC-TGATAAAGC
* * *
15393 AATGATCCTGAGTAGGATCTTGAAATTAATTTGATAAAGC
1 AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
* *
15433 AATGATCCTGAGTAGGATTTTGAAATTAATTTGATAAAGC
1 AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
** * *
15473 AATGATCCTGAGCAGGATTTTGAAATTAA-CCGATAAAGA
1 AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
* * * * *
15512 AAAGATCCTGAATAGGATTGTG--ATTGA-CTGGTAAAGA
1 AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
*
15549 AATGATCCTGAGTAGGATT
1 AATGATCCTGAATAGGATT
15568 CTGATATCGA
Statistics
Matches: 188, Mismatches: 25, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
37 29 0.15
39 26 0.14
40 133 0.71
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (40 bp):
AATGATCCTGAATAGGATTTTGAAATTAATCTGATAAAGC
Found at i:15954 original size:141 final size:141
Alignment explanation
Indices: 15653--16639 Score: 1481
Period size: 141 Copynumber: 6.9 Consensus size: 141
15643 AAAACATGGA
** * * *
15653 ATACCCGGAGGACATGTCAGAATTAATACCCAGAGGTTTCTGAAATTGTGCCCAGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
* * * * *
15718 AATGCAAACTCGACCTTGGGCAAGGTTTTGATTTTGAAACTTAAATGCAACTTTGATTAAAAACT
66 AATGCAAACTCAACCTTGAGCAAGG--TT--CTTTGAAATTTAAACGCAACTTTGATTAAAAACT
15783 TGATGAAATGAAATG
127 TGATGAAATGAAATG
* * * * *
15798 ATACCCGGAGGATTTATCATAATTAATTCCTGGAGGTTTCCGAAATTGTGCTCGGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
* *
15863 AATGTAAACTCAACCTTGAGCAAGGTTCTTTGAAATTTAAACGCAACTTTGATTAAAAACATGAT
66 AATGCAAACTCAACCTTGAGCAAGGTTCTTTGAAATTTAAACGCAACTTTGATTAAAAACTTGAT
*
15928 GGAATGAAATG
131 GAAATGAAATG
*
15939 ATACCCGGAGGATTTATCAGAATTAATACCCAGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
* * *
16004 AATGCAAACTCAACCTTGAACAAGGTTTTCTTTTGAAATTTAAACGCAGCTTTGATTAAAAACCT
66 AATGCAAACTCAACCTTGAGCAAGG--TTC-TTTGAAATTTAAACGCAACTTTGATTAAAAACTT
16069 GATGAAATGAAATG
128 GATGAAATGAAATG
*
16083 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCACGGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
*
16148 AATGCAAACTCAACCTTGAGCAAGGTTTTTTGAAATTTAAACGCAACTTTGATTAAAAAAACTTG
66 AATGCAAACTCAACCTTGAGCAAGGTTCTTTGAAATTTAAACGCAACTTTGATT--AAAAACTTG
*
16213 ATGGAATGAAATG
129 ATGAAATGAAATG
16226 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
* * *
16291 AATGCAAACTCAACCTTGAGCAAGGTTTTCTTTTTGAAATTTAAATGCAGCTTTGATTAAAAACC
66 AATGCAAACTCAACCTTGAGCAAGG--TTC--TTTGAAATTTAAACGCAACTTTGATTAAAAACT
16356 TGATGAAATGAAATG
127 TGATGAAATGAAATG
* *
16371 ATACCAGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTATA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
*
16436 AATGCAAACTCAACCTTGAGCAAGGTTTTTTGAAATTTAAACGCAACTTTGATTAAAAACTTGAT
66 AATGCAAACTCAACCTTGAGCAAGGTTCTTTGAAATTTAAACGCAACTTTGATTAAAAACTTGAT
*
16501 GGAATGAAATG
131 GAAATGAAATG
*
16512 ATACCCGGAGGATTTATCAGAATTAATACCCGAAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
1 ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
* * * * * *
16577 AATACAAAACTCGACCTTGAGCAAGGTT-TATTAAAATTTAAACACAACTTTGCTGAAAAACTT
66 AATGC-AAACTCAACCTTGAGCAAGGTTCT-TTGAAATTTAAACGCAACTTTGATTAAAAACTT
16640 ACCAAAATGG
Statistics
Matches: 773, Mismatches: 58, Indels: 25
0.90 0.07 0.03
Matches are distributed among these distances:
141 262 0.34
142 52 0.07
143 116 0.15
144 132 0.17
145 187 0.24
147 24 0.03
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (141 bp):
ATACCCGGAGGATTTATCAGAATTAATACCCGGAGGTTTCTGAAATTGTGCCCGGAGGTCTTACA
AATGCAAACTCAACCTTGAGCAAGGTTCTTTGAAATTTAAACGCAACTTTGATTAAAAACTTGAT
GAAATGAAATG
Found at i:17853 original size:19 final size:19
Alignment explanation
Indices: 17829--17865 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
17819 TTTTTTCAAT
17829 TTTTCAATTTCCACTTTTA
1 TTTTCAATTTCCACTTTTA
* *
17848 TTTTCAGTTTTCACTTTT
1 TTTTCAATTTCCACTTTT
17866 TTTGTTTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTCAATTTCCACTTTTA
Done.