Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016852.1 Corchorus olitorius cultivar O-4 contig16885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7450

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1543--1575
8
4.2
8
92
7
59
75
0
12
12
1.04
1543--1575
15
2.2
15
100
0
66
75
0
12
12
1.04
1972--2017
16
2.7
18
77
19
53
80
6
6
6
1.02
2003--2035
12
2.8
12
86
4
50
78
9
0
12
0.95
2259--2291
14
2.4
14
100
0
66
36
9
18
36
1.82
2335--2417
27
3.0
27
82
8
87
74
0
15
9
1.06
2335--2413
39
2.0
39
80
9
90
75
0
15
8
1.02
2356--2383
10
2.8
10
100
0
56
78
0
10
10
0.96
3715--4153
35
12.5
35
83
2
551
16
22
20
40
1.91
3715--4230
35
15.0
35
80
7
500
17
22
20
39
1.92
3715--4153
71
6.3
70
88
3
553
16
22
20
40
1.91
4347--4791
162
2.7
163
88
0
658
28
20
17
32
1.96
4759--4804
20
2.3
20
84
0
56
28
19
19
32
1.96
4828--5313
30
16.2
30
79
5
491
21
13
19
45
1.85
4828--5309
150
3.2
150
94
0
831
21
13
19
45
1.85
5622--5694
26
2.7
27
91
6
121
15
15
27
42
1.86

Tables:   1

The End!