Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016856.1 Corchorus olitorius cultivar O-4 contig16889, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27162

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
443--523
39
2.0
40
92
2
137
37
3
8
50
1.51
2228--2266
2
19.5
2
100
0
78
0
48
0
51
1.00
6680--6729
7
7.3
7
86
4
75
84
2
14
0
0.72
13543--13572
15
2.0
15
100
0
60
20
20
0
60
1.37
17306--17334
6
4.8
6
100
0
58
0
34
13
51
1.42
21269--21309
21
1.9
22
85
5
57
9
14
29
46
1.77
23064--23110
22
2.1
22
84
7
60
61
2
12
23
1.42
23755--23785
12
2.6
12
94
0
53
16
3
29
51
1.59
26402--26426
3
8.3
3
100
0
50
36
0
0
64
0.94
26500--26549
23
2.2
22
89
6
82
52
16
8
24
1.70

Tables:   1

The End!