Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016860.1 Corchorus olitorius cultivar O-4 contig16893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35295

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6198--6263
27
2.4
28
82
7
91
13
7
31
46
1.71
8021--8060
15
2.6
16
92
4
64
65
12
7
15
1.47
11343--11397
21
2.6
21
85
0
65
12
21
47
18
1.82
14527--14586
27
2.4
24
75
20
59
40
16
10
33
1.82
14538--14592
27
2.0
28
86
10
78
40
12
9
38
1.75
14986--15025
15
2.6
16
92
4
64
65
12
7
15
1.47
17314--17643
167
2.0
166
93
1
572
30
14
32
23
1.94
19554--19619
32
2.1
32
91
5
107
43
27
1
27
1.64
21654--21728
24
3.1
24
92
0
114
13
33
18
34
1.90
22340--22381
2
21.0
2
100
0
84
50
0
0
50
1.00
23341--23466
63
2.0
63
95
0
225
41
4
23
30
1.75
29191--29225
18
2.1
18
89
10
56
37
11
5
45
1.64
32089--32167
22
3.5
22
79
8
79
31
12
5
50
1.62
35163--35218
29
2.0
28
89
3
85
41
21
8
28
1.83

Tables:   1

The End!