Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016863.1 Corchorus olitorius cultivar O-4 contig16896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8649

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--213
48
4.4
48
84
5
277
11
23
20
44
1.84
2705--2742
7
5.6
7
93
3
60
76
0
23
0
0.79
2849--2899
14
3.5
15
80
15
54
45
7
9
37
1.67
2869--2899
13
2.3
13
94
5
53
45
6
12
35
1.68
4403--4536
35
3.8
35
76
3
126
22
21
15
40
1.91
4547--4587
21
2.0
21
95
4
75
24
14
14
46
1.82
4568--4904
36
9.4
36
86
3
450
19
20
17
42
1.89
4484--4658
92
1.9
90
84
4
235
21
21
17
40
1.92
4568--4904
71
4.7
71
91
1
523
19
20
17
42
1.89
4568--4904
107
3.2
106
89
2
505
19
20
17
42
1.89
5168--5914
30
25.1
30
85
3
900
21
14
19
44
1.86
6374--6430
27
2.2
26
90
3
87
17
14
28
40
1.88

Tables:   1

The End!