Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016870.1 Corchorus olitorius cultivar O-4 contig16903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42134

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--55
13
2.8
13
88
12
56
38
2
2
55
1.29
1347--1372
8
3.2
8
100
0
52
11
23
38
26
1.89
1453--1487
13
2.6
13
90
4
52
71
0
0
28
0.86
7805--7870
21
3.2
21
84
4
89
37
13
19
28
1.90
7881--7966
22
4.1
20
74
11
75
44
9
8
38
1.66
8027--8056
2
15.0
2
100
0
60
50
0
0
50
1.00
8410--8457
16
3.0
16
87
0
69
45
25
16
12
1.82
10000--10149
76
2.0
77
92
2
250
50
1
12
35
1.49
15629--15890
107
2.4
108
87
3
384
37
8
12
41
1.75
32499--32564
28
2.4
28
100
0
132
59
22
0
18
1.38
36199--36491
39
7.4
38
80
12
267
31
15
17
35
1.91
37420--37468
3
16.0
3
82
4
62
0
28
6
65
1.16
37433--37468
15
2.4
15
100
0
72
0
27
5
66
1.13
38845--38907
30
2.1
30
94
5
110
20
34
15
28
1.94
40986--41057
35
2.1
34
92
2
117
44
26
12
16
1.83
41212--41292
42
1.9
42
92
0
135
35
29
14
19
1.92

Tables:   1

The End!