Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016875.1 Corchorus olitorius cultivar O-4 contig16908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39295

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2688--2719
16
1.9
17
93
6
57
81
0
9
9
0.88
2976--3012
19
1.9
19
88
0
56
62
10
10
16
1.55
7320--7359
15
2.6
16
88
4
55
62
12
10
15
1.54
8805--8864
29
2.0
30
83
6
77
35
16
8
40
1.79
10731--10785
21
2.6
21
85
0
65
20
20
40
20
1.92
13949--13996
18
2.6
17
77
9
51
31
10
10
47
1.71
14367--14406
15
2.6
16
88
4
55
62
10
10
17
1.53
19258--19309
26
2.0
26
88
7
79
53
1
21
23
1.55
20948--20986
20
2.0
20
94
0
69
53
5
0
41
1.23
21506--22378
41
21.1
41
86
2
1065
37
18
28
15
1.91
22205--22475
48
5.9
47
86
6
360
37
18
26
16
1.93
22246--22475
95
2.4
94
90
4
356
37
19
26
17
1.93
23027--23210
50
3.7
49
78
6
183
37
14
5
42
1.70
23365--23639
50
5.5
50
95
0
453
37
17
4
41
1.68
23484--23618
30
5.2
30
59
37
80
37
20
1
40
1.62
23365--23686
100
3.2
99
88
2
380
36
17
4
41
1.68
23365--23686
150
2.2
149
86
3
425
36
17
4
41
1.68
26584--26611
5
5.6
5
100
0
56
21
0
17
60
1.36
33179--33228
26
1.9
26
88
8
75
18
46
8
28
1.77
35937--35982
23
2.0
23
100
0
92
26
26
4
43
1.73

Tables:   1

The End!