Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016881.1 Corchorus olitorius cultivar O-4 contig16914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2519
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32


Found at i:1353 original size:19 final size:18

Alignment explanation


    Indices: 1320--1355  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1310 TGAAAATAAT

                              
       1320 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
       1338 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

       1356 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA
Done.