Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016884.1 Corchorus olitorius cultivar O-4 contig16917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3563
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:1139 original size:222 final size:223

Alignment explanation


    Indices: 752--1196  Score: 811
    Period size: 222  Copynumber: 2.0  Consensus size: 223

        742 ATATGTACAG

                                                        *                    
        752 TACGATGGAACTGGATTCATAGCCAGTTCCGGTTCAATCCGCTCGTCCAACTCGGTTCTGTCAAC
          1 TACGATGGAACTGGATTCATAGCCAGTTCCGGTTCAATCCGCTCATCCAACTCGGTTCTGTCAAC

                                                                             
        817 ACTGCCTTTTTGTATTATTAAGCTGCAATCCTGATTTAAACTGATAAGGCATATCAACCTGATAA
         66 ACTGCCTTTTTGTATTATTAAGCTGCAATCCTGATTTAAACTGATAAGGCATATCAACCTGATAA

                   *                                                         
        882 AGATCAAGTCTCATAGGACTCTAACTACTTGATCTCTTTAGCCTCTTGTACAACCAATCCTTATA
        131 AGATCAAATCTCATAGGACTCTAACTACTTGATCTCTTTAGCCTCTTGTACAACCAATCCTTATA

                   *                    
        947 CTTATATGTATCAATAACAATCTGATGT
        196 CTTATATATATCAATAACAATCTGATGT

                                                             *               
        975 TACGATGGAACTGGATTCATAGCCAGTTCCGGTTCAATCCGCTCATCCAGCTCGGTTCTGTCAAC
          1 TACGATGGAACTGGATTCATAGCCAGTTCCGGTTCAATCCGCTCATCCAACTCGGTTCTGTCAAC

                            *                                                
       1040 ACTGCCTTTTT-TATTTTTAAGCTGCAATCCTGATTTAAACTGATAAGGCATATCAACCTGATAA
         66 ACTGCCTTTTTGTATTATTAAGCTGCAATCCTGATTTAAACTGATAAGGCATATCAACCTGATAA

                                                                *            
       1104 AGATCAAATCTCATAGGACTCTAACTACTTGATCTCTTTAGCCTCTTGTACAGCCAATCCTTATA
        131 AGATCAAATCTCATAGGACTCTAACTACTTGATCTCTTTAGCCTCTTGTACAACCAATCCTTATA

                 *            *         
       1169 CTTATCTATATCAATAACCATCTGATGT
        196 CTTATATATATCAATAACAATCTGATGT

       1197 ATTCTCCTTG


Statistics
Matches: 214,  Mismatches: 8, Indels: 1
        0.96            0.04        0.00

Matches are distributed among these distances:
 222  140  0.65
 223   74  0.35

ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33


Consensus pattern (223 bp):   
TACGATGGAACTGGATTCATAGCCAGTTCCGGTTCAATCCGCTCATCCAACTCGGTTCTGTCAAC
ACTGCCTTTTTGTATTATTAAGCTGCAATCCTGATTTAAACTGATAAGGCATATCAACCTGATAA
AGATCAAATCTCATAGGACTCTAACTACTTGATCTCTTTAGCCTCTTGTACAACCAATCCTTATA
CTTATATATATCAATAACAATCTGATGT
Done.