Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016888.1 Corchorus olitorius cultivar O-4 contig16921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111836

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4595--4632
18
2.2
17
95
4
67
44
0
23
31
1.54
4599--4632
9
3.9
9
92
3
52
47
0
26
26
1.53
5905--6048
49
3.0
47
82
11
159
27
14
5
52
1.64
8876--8905
14
2.1
14
100
0
60
16
20
6
56
1.62
9074--9176
30
3.4
30
87
2
154
16
12
35
34
1.87
17481--17623
49
3.0
48
84
8
175
52
6
13
26
1.66
28357--28402
24
1.9
24
100
0
92
39
15
23
21
1.92
31150--31183
17
2.0
17
88
0
50
41
2
2
52
1.31
32645--32703
22
2.7
22
86
5
84
37
8
11
42
1.72
32792--32898
31
3.6
31
65
14
82
20
16
19
42
1.89
32785--32898
56
2.0
57
82
1
140
19
16
18
45
1.85
33770--33829
29
2.1
29
100
0
120
51
6
6
35
1.54
35337--35367
16
1.9
16
93
0
53
83
6
9
0
0.79
35899--35940
22
1.9
22
95
0
75
40
11
7
40
1.69
48734--48761
14
2.0
14
100
0
56
14
21
21
42
1.88
63374--63409
18
2.1
18
89
5
56
44
5
11
38
1.63
65138--65219
18
4.2
18
77
19
92
9
13
9
67
1.43
65143--65187
12
3.7
12
93
3
72
8
13
8
68
1.38
65861--65910
21
2.4
21
76
6
57
24
8
6
62
1.46
67979--68009
15
2.1
15
93
0
53
51
19
9
19
1.74
70585--70631
17
2.8
17
90
9
78
23
38
10
27
1.88
84240--84270
12
2.5
13
89
10
55
80
0
12
6
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85413--85441
9
3.3
9
95
4
51
44
0
20
34
1.52
86298--86331
12
2.8
12
100
0
68
17
50
14
17
1.79
86709--86838
50
2.7
48
84
8
165
29
14
6
49
1.69
90416--90453
18
2.1
18
95
0
67
47
28
0
23
1.52
102002--102980
487
2.0
494
95
1
1783
39
19
13
26
1.90
106733--106787
29
1.9
28
82
10
67
38
14
9
38
1.78
108521--108571
21
2.4
21
83
9
59
35
17
7
39
1.79
109363--109406
18
2.6
16
76
16
52
22
18
9
50
1.75

Tables:   1

The End!