Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016891.1 Corchorus olitorius cultivar O-4 contig16924, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 195982
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:750 original size:29 final size:31
Alignment explanation
Indices: 689--751 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
679 AACTAAACAT
* *
689 CAAAAAAATCTCTTATGTTTTTCTTTTGGGA
1 CAAAAAAATCTCTTATGTTTTTCTTATGAGA
* *
720 CAAAATAATCTTTTATG-TTTT-TTATGAGA
1 CAAAAAAATCTCTTATGTTTTTCTTATGAGA
749 CAA
1 CAA
752 TTTAGTCCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 9 0.32
30 4 0.14
31 15 0.54
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (31 bp):
CAAAAAAATCTCTTATGTTTTTCTTATGAGA
Found at i:937 original size:29 final size:30
Alignment explanation
Indices: 895--967 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
885 CTCATTTTTG
* **
895 AAACGTAAGGGATTAATTT-GTCCCGAAAA
1 AAACATAAGGGATTAATTTAGTCCAAAAAA
** *
924 AAACATAAGGGATTTTTTTATTCCAAAAAA
1 AAACATAAGGGATTAATTTAGTCCAAAAAA
954 AAACATAAGGGATT
1 AAACATAAGGGATT
968 TTTTTGGGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 16 0.43
30 21 0.57
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (30 bp):
AAACATAAGGGATTAATTTAGTCCAAAAAA
Found at i:6265 original size:1 final size:1
Alignment explanation
Indices: 6249--6283 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
6239 CGATGTAATG
* *
6249 AAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6284 CTGCATTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:7837 original size:15 final size:15
Alignment explanation
Indices: 7817--7849 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7807 CAACTATACA
7817 ATCATAAGAATTGCC
1 ATCATAAGAATTGCC
7832 ATCATAAGAATTGCC
1 ATCATAAGAATTGCC
7847 ATC
1 ATC
7850 GGAATCAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.27
Consensus pattern (15 bp):
ATCATAAGAATTGCC
Found at i:16696 original size:12 final size:11
Alignment explanation
Indices: 16677--16706 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
16667 CTTGTGTAAG
16677 TTTTTTTTCTT
1 TTTTTTTTCTT
16688 TTCTTTTTTCTT
1 TT-TTTTTTCTT
16700 TTTTTTT
1 TTTTTTT
16707 AGAACTTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:20843 original size:12 final size:13
Alignment explanation
Indices: 20826--20858 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
20816 AAAGGAAGAA
20826 AAAGAAAGAAA-C
1 AAAGAAAGAAAGC
20838 AAAGAAAGAAAGC
1 AAAGAAAGAAAGC
20851 AAGAGAAA
1 AA-AGAAA
20859 AGGAATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 3 0.16
14 5 0.26
ACGTcount: A:0.73, C:0.06, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAGC
Found at i:32584 original size:16 final size:16
Alignment explanation
Indices: 32560--32590 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32550 ATTTGTATGT
*
32560 ACAGGAGGGAGAAGAG
1 ACAGAAGGGAGAAGAG
32576 ACAGAAGGGAGAAGA
1 ACAGAAGGGAGAAGA
32591 CAGACCGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.06, G:0.45, T:0.00
Consensus pattern (16 bp):
ACAGAAGGGAGAAGAG
Found at i:36786 original size:11 final size:11
Alignment explanation
Indices: 36770--36799 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
36760 GAAGTTCATG
*
36770 TTTGAAGATCA
1 TTTGAAGATAA
36781 TTTGAAGATAA
1 TTTGAAGATAA
36792 TTTGAAGA
1 TTTGAAGA
36800 CTTGAAGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (11 bp):
TTTGAAGATAA
Found at i:39004 original size:105 final size:104
Alignment explanation
Indices: 38869--39158 Score: 311
Period size: 103 Copynumber: 2.8 Consensus size: 104
38859 TCTAAAACCA
*
38869 TATAAGAATACA-TTT-AATTTGATGGCTTACCCTTAAAATGAATTAAATTATATATATTTGGGG
1 TATAAGAATACATTTTCAATTTGATGACTTACCCTTAAAATGAATTAAATT-TATATATTTGGGG
* * *
38932 CTAAACTTAGTAAAATGCATTGATTTTT-TTTAAAA-ATTTT
65 CTAAAATTAGTAAAATGCA-TAATTTTTATTTAAAATA-TCT
* * * *
38972 TATAAGAATACATTTTCAATTTGATGACTTACCATTAAAATGAATT-ACTTTTTTTATTTGGGGC
1 TATAAGAATACATTTTCAATTTGATGACTTACCCTTAAAATGAATTAAATTTATATATTTGGGGC
* * **
39036 TAAAATTAGTGAAATTCATAATTTTTATTTCTAATATCT
66 TAAAATTAGTAAAATGCATAATTTTTATTTAAAATATCT
* * * * * *
39075 TATAAGAATGCATTTTCAATTTAATGACTTACTCTTAAAATAAATTAGTAAATTTTTTTATTTGG
1 TATAAGAATACATTTTCAATTTGATGACTTACCCTTAAAATGAA-T--TAAATTTATATATTTGG
*
39140 AGGCTAAAATTAGTGAAAT
63 -GGCTAAAATTAGTAAAAT
39159 TTGTTGTGTT
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
102 7 0.04
103 85 0.53
104 8 0.05
105 27 0.17
106 1 0.01
107 14 0.09
108 18 0.11
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.43
Consensus pattern (104 bp):
TATAAGAATACATTTTCAATTTGATGACTTACCCTTAAAATGAATTAAATTTATATATTTGGGGC
TAAAATTAGTAAAATGCATAATTTTTATTTAAAATATCT
Found at i:41279 original size:25 final size:26
Alignment explanation
Indices: 41245--41294 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
41235 GGTACTGTAG
41245 AAATTGAATTTTTCT-AATAAAATAA
1 AAATTGAATTTTTCTAAATAAAATAA
41270 AAATTGAATTTTTCTAAATAAAATA
1 AAATTGAATTTTTCTAAATAAAATA
41295 TTTTAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (26 bp):
AAATTGAATTTTTCTAAATAAAATAA
Found at i:41446 original size:28 final size:26
Alignment explanation
Indices: 41414--41479 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 26
41404 AAAAATACAC
*
41414 AAAATTATATTTTAATAGTGGCATAATT
1 AAAA-TATATTTTAATAATGGCA-AATT
* *
41442 AAAATATTTTTTAATAATGGCAATTT
1 AAAATATATTTTAATAATGGCAAATT
41468 AGAAATATATTT
1 A-AAATATATTT
41480 GAAAAAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 4 0.12
27 25 0.76
28 4 0.12
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (26 bp):
AAAATATATTTTAATAATGGCAAATT
Found at i:41560 original size:10 final size:10
Alignment explanation
Indices: 41532--41578 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
41522 TTCGTACTTT
*
41532 TATATATAG-
1 TATAGATAGA
*
41541 TATCGATAGA
1 TATAGATAGA
41551 TATAGATAGA
1 TATAGATAGA
41561 TATAGATAGA
1 TATAGATAGA
*
41571 TTTAGATA
1 TATAGATA
41579 TATTTCTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
9 7 0.21
10 26 0.79
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (10 bp):
TATAGATAGA
Found at i:41583 original size:10 final size:10
Alignment explanation
Indices: 41545--41583 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
41535 ATATAGTATC
*
41545 GATAGATATA
1 GATAGATTTA
*
41555 GATAGATATA
1 GATAGATTTA
41565 GATAGATTTA
1 GATAGATTTA
*
41575 GATATATTT
1 GATAGATTT
41584 CTAAATTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (10 bp):
GATAGATTTA
Found at i:47619 original size:15 final size:15
Alignment explanation
Indices: 47599--47629 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47589 TCAGATGTTT
47599 AGAAAATCGCTTGCA
1 AGAAAATCGCTTGCA
*
47614 AGAAAATCTCTTGCA
1 AGAAAATCGCTTGCA
47629 A
1 A
47630 CTTTGCAGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (15 bp):
AGAAAATCGCTTGCA
Found at i:49722 original size:41 final size:41
Alignment explanation
Indices: 49676--49761 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
49666 GGCCATCACA
*
49676 TTATTTTAAAAATGAATCTGCCATTTTTGTTTTACATATGG
1 TTATTTTAAAAATGAATCTGCCATTTTGGTTTTACATATGG
* *
49717 TTATTTTGAAAATGAATCTGCCATTTTGGTTTTGCATATGG
1 TTATTTTAAAAATGAATCTGCCATTTTGGTTTTACATATGG
49758 TTAT
1 TTAT
49762 ATGAGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.49
Consensus pattern (41 bp):
TTATTTTAAAAATGAATCTGCCATTTTGGTTTTACATATGG
Found at i:51840 original size:176 final size:177
Alignment explanation
Indices: 51448--51884 Score: 581
Period size: 176 Copynumber: 2.5 Consensus size: 177
51438 GATTCAAACG
* * *
51448 TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATGAAGAACTCGAAAA-CTAAATTTAATCT
1 TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTC-AAAAGCTAAATTTAATAT
* * *
51512 TTCAAGTATAAAAAATGCTTCCGAAAAATTAGTTGTTTCAATTAACAGGAATGGACGGTCCACTT
65 TTCAAGTATAAAAAATGC-TCCAAAAAATTAGTTGTTTCAATTAACAGGAATAGACCGTCCACTT
* * * * *
51577 AATATTACATAACTTTTGCTCCAGATGTCTAATTGAGGTGATTCAATTG
129 AATATTACATAACTTTTGCACCAGATGTCCAATTAAGGTGATTCAAGTA
* *
51626 TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTTAAAAGCTAAATTTAATGTT
1 TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTCAAAAGCTAAATTTAATATT
** * *
51691 TCAAGTATAAAAAATGCTCCAAAAAATTAGTTGTTTCGGTTACCA-GAATAGACCGTTCACTTAA
66 TCAAGTATAAAAAATGCTCCAAAAAATTAGTTGTTTCAATTAACAGGAATAGACCGTCCACTTAA
* *
51755 TATTACATAATTTTTGCACCAGATGTCCGATTAAGGTGATTCAAGTA
131 TATTACATAACTTTTGCACCAGATGTCCAATTAAGGTGATTCAAGTA
* * ** * * *
51802 TCTGTTAAAAAGTTGTTCTGTGATTTACAACTTTCATTAAGGACTCGAAAGCTAAATTTGATATT
1 TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTCAAAAGCTAAATTTAATATT
* **
51867 TCAAATACCAAAAATGCT
66 TCAAGTATAAAAAATGCT
51885 TCTGAAAAAT
Statistics
Matches: 228, Mismatches: 30, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
176 127 0.56
177 28 0.12
178 73 0.32
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (177 bp):
TCTCTTAAAAGGTTGTTCCATGATCTACAACTTTCATTAAGGACTCAAAAGCTAAATTTAATATT
TCAAGTATAAAAAATGCTCCAAAAAATTAGTTGTTTCAATTAACAGGAATAGACCGTCCACTTAA
TATTACATAACTTTTGCACCAGATGTCCAATTAAGGTGATTCAAGTA
Found at i:62291 original size:45 final size:44
Alignment explanation
Indices: 62225--62312 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 44
62215 TAGCATCAAT
62225 TCCAACATTATTATATAGATTGAATACATGGTTCTTAAACTAAG
1 TCCAACATTATTATATAGATTGAATACATGGTTCTTAAACTAAG
62269 TCCAACATTATTTATATAGATTGAATACATGGTTCTTAAACTAA
1 TCCAACATTA-TTATATAGATTGAATACATGGTTCTTAAACTAA
62313 CTTAAGCATC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 10 0.23
45 33 0.77
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.38
Consensus pattern (44 bp):
TCCAACATTATTATATAGATTGAATACATGGTTCTTAAACTAAG
Found at i:64725 original size:20 final size:20
Alignment explanation
Indices: 64700--64742 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
64690 CTTAGCCTTA
64700 AAAACTAACTGCGTCAAAAT
1 AAAACTAACTGCGTCAAAAT
64720 AAAACTAACTGCGTCAAAAT
1 AAAACTAACTGCGTCAAAAT
64740 AAA
1 AAA
64743 TGCATGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.53, C:0.19, G:0.09, T:0.19
Consensus pattern (20 bp):
AAAACTAACTGCGTCAAAAT
Found at i:69471 original size:10 final size:10
Alignment explanation
Indices: 69456--69488 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
69446 CGGCATCAAG
69456 AAAAAAAAAC
1 AAAAAAAAAC
69466 AAAAAAAAA-
1 AAAAAAAAAC
69475 AAAAAAAAAC
1 AAAAAAAAAC
69485 AAAA
1 AAAA
69489 CTAGCATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:70492 original size:23 final size:23
Alignment explanation
Indices: 70449--70494 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70439 ACCAACAAGT
*
70449 CTACAATAAATTACTTAAAAAAA
1 CTACAATAAATTACATAAAAAAA
*
70472 CTACAATAAATTGCCATAAAAAA
1 CTACAATAAATT-ACATAAAAAA
70495 TATTATTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (23 bp):
CTACAATAAATTACATAAAAAAA
Found at i:77420 original size:14 final size:14
Alignment explanation
Indices: 77401--77428 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77391 TAATCCATGA
77401 ATTGTTTTCCTTCT
1 ATTGTTTTCCTTCT
77415 ATTGTTTTCCTTCT
1 ATTGTTTTCCTTCT
77429 TTTTTTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.21, G:0.07, T:0.64
Consensus pattern (14 bp):
ATTGTTTTCCTTCT
Found at i:78363 original size:5 final size:5
Alignment explanation
Indices: 78353--78395 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
78343 TTTTGAGATG
78353 TACCA TACCA TACCA TACCA TACCA TACCA TACCA TACCA TAC
1 TACCA TACCA TACCA TACCA TACCA TACCA TACCA TACCA TAC
78396 TATAAAGATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (5 bp):
TACCA
Found at i:80456 original size:2 final size:2
Alignment explanation
Indices: 80449--80484 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
80439 TCTTCTTGCC
80449 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80485 AGTACTTCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81083 original size:6 final size:6
Alignment explanation
Indices: 81072--81099 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
81062 TTTTTTATTC
81072 TTCTCT TTCTCT TTCTCT TTCTCT TTCT
1 TTCTCT TTCTCT TTCTCT TTCTCT TTCT
81100 TCTTCCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCTCT
Found at i:85793 original size:12 final size:12
Alignment explanation
Indices: 85778--85802 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85768 CTGCAACCTC
85778 TTTTTTTCTTTT
1 TTTTTTTCTTTT
85790 TTTTTTTCTTTT
1 TTTTTTTCTTTT
85802 T
1 T
85803 CAATTTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:102733 original size:26 final size:28
Alignment explanation
Indices: 102689--102744 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 28
102679 CAAGGCATCA
*
102689 TCCTTCTAGATGGGAGATGGA-AA-TCT
1 TCCTCCTAGATGGGAGATGGATAATTCT
**
102715 TCCTCCTAGATGGTTGATGGATAATTCT
1 TCCTCCTAGATGGGAGATGGATAATTCT
102743 TC
1 TC
102745 TTTCTTCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 18 0.72
27 2 0.08
28 5 0.20
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (28 bp):
TCCTCCTAGATGGGAGATGGATAATTCT
Found at i:104036 original size:2 final size:2
Alignment explanation
Indices: 104029--104079 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
104019 AGATAATTAG
*
104029 TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
104071 TA TA TA TA T
1 TA TA TA TA T
104080 CATCCATGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:113138 original size:31 final size:31
Alignment explanation
Indices: 113072--113168 Score: 86
Period size: 31 Copynumber: 3.1 Consensus size: 31
113062 TAATTAAGTC
* * * * * *
113072 CCTAACATTGCAAAATCGACTAAAACCTGTC
1 CCTAACGTTGCAAAAACGACTCAAATCAGTT
*
113103 CCTAACGTTGCAAAAACGATTCAAATCAGTT
1 CCTAACGTTGCAAAAACGACTCAAATCAGTT
* * ** *
113134 CCTAATGTTTCAAAATTGGCTCAAATCAGTT
1 CCTAACGTTGCAAAAACGACTCAAATCAGTT
113165 CCTA
1 CCTA
113169 GTGTCAATTT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (31 bp):
CCTAACGTTGCAAAAACGACTCAAATCAGTT
Found at i:113751 original size:31 final size:31
Alignment explanation
Indices: 113711--113789 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
113701 ATTTTTAGCC
* *
113711 ACCAATTTGAGTCTAAACCTTTCAAAAGTT-
1 ACCAATTTGAGCCTAAACCTTTCAAAAATTG
* *
113741 ACTCAATTTGAGGCTAAATCTTTCAAAAATTG
1 AC-CAATTTGAGCCTAAACCTTTCAAAAATTG
113773 ACCAATTTGAGCCTAAA
1 ACCAATTTGAGCCTAAA
113790 ATCAGAAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
30 2 0.05
31 39 0.91
32 2 0.05
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (31 bp):
ACCAATTTGAGCCTAAACCTTTCAAAAATTG
Found at i:121321 original size:24 final size:24
Alignment explanation
Indices: 121290--121342 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
121280 TTTTTTCTTT
121290 ATTC-TATTTGTCCAATTAAGGTA
1 ATTCATATTTGTCCAATTAAGGTA
*
121313 ATTCATATTTGTCCCATTAAGGTA
1 ATTCATATTTGTCCAATTAAGGTA
121337 ATTCAT
1 ATTCAT
121343 GAAGGAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 4 0.14
24 24 0.86
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (24 bp):
ATTCATATTTGTCCAATTAAGGTA
Found at i:126241 original size:15 final size:17
Alignment explanation
Indices: 126215--126246 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
126205 ATCTACCTAC
126215 CAAATATACAAA-TAAA
1 CAAATATACAAACTAAA
126231 CAAAT-TACAAACTAAA
1 CAAATATACAAACTAAA
126247 GTCACATTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.19
Consensus pattern (17 bp):
CAAATATACAAACTAAA
Found at i:128137 original size:40 final size:40
Alignment explanation
Indices: 128079--128159 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
128069 TTTATAACTA
* *
128079 GGGGCTAAAACTGGATTTAATTTCTCACCTTAATTATTAG
1 GGGGCTAAAACTGAATTTAATTTATCACCTTAATTATTAG
* **
128119 GGGGCTAAACCTGAATTTAATTTATTTCCTTAATTATTAG
1 GGGGCTAAAACTGAATTTAATTTATCACCTTAATTATTAG
128159 G
1 G
128160 AGGGTCAAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.40
Consensus pattern (40 bp):
GGGGCTAAAACTGAATTTAATTTATCACCTTAATTATTAG
Found at i:128468 original size:20 final size:20
Alignment explanation
Indices: 128431--128468 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
128421 ATATCAACTA
*
128431 TATTTTTTTACTTGATTTAT
1 TATTTTTTTACTTAATTTAT
128451 TATTTTTTT-CTCTAATTT
1 TATTTTTTTACT-TAATTT
128469 TTTACGTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.71
Consensus pattern (20 bp):
TATTTTTTTACTTAATTTAT
Found at i:128997 original size:21 final size:21
Alignment explanation
Indices: 128971--129022 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
128961 AAATACACAA
*
128971 GCCGTCAACTTTAACGGTGGC
1 GCCGTCAACTTTAACAGTGGC
128992 GCCGTCAACTTTAACAGTGGC
1 GCCGTCAACTTTAACAGTGGC
* *
129013 ACCGTTAACT
1 GCCGTCAACT
129023 ATTTTATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (21 bp):
GCCGTCAACTTTAACAGTGGC
Found at i:129419 original size:28 final size:28
Alignment explanation
Indices: 129366--129420 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
129356 TTTAATAACC
*
129366 ATTTAAAATCAATATAAAAAGAAAAGAA
1 ATTTAAAATCAATAAAAAAAGAAAAGAA
129394 ATTTAAAAT-AA-AAAATAAAGAGAAAGA
1 ATTTAAAATCAATAAAA-AAAGA-AAAGA
129421 TTATGCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 3 0.12
27 7 0.29
28 14 0.58
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (28 bp):
ATTTAAAATCAATAAAAAAAGAAAAGAA
Found at i:131219 original size:60 final size:60
Alignment explanation
Indices: 131089--131250 Score: 162
Period size: 60 Copynumber: 2.6 Consensus size: 60
131079 ACGCCAGACC
* * * * *
131089 CTTATTTGAGCATTTTCGATAACGTACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAGCC
1 CTTATTTGAGCATTTT-GACAA-ATA--TTAGACCCTTATTTGACCAAATTAAAAGATCGAGCA
* *
131153 CATATTTGAGCATTTTGACAAATATTAGACCCTTATTTGACCAAATTAAAAGATCGGGCA
1 CTTATTTGAGCATTTTGACAAATATTAGACCCTTATTTGACCAAATTAAAAGATCGAGCA
* * * * * **
131213 TTTATTTAAGTATTTTAAGAAACGTTAGACCCTTATTT
1 CTTATTTGAGCATTTTGACAAATATTAGACCCTTATTT
131251 TAGCATTTAG
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
60 62 0.75
62 2 0.02
63 4 0.05
64 15 0.18
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (60 bp):
CTTATTTGAGCATTTTGACAAATATTAGACCCTTATTTGACCAAATTAAAAGATCGAGCA
Found at i:132628 original size:21 final size:21
Alignment explanation
Indices: 132602--132641 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
132592 AGTTTGAATG
132602 AAAAACACGAAGCTTGAGAGA
1 AAAAACACGAAGCTTGAGAGA
*
132623 AAAAACACGGAGCTTGAGA
1 AAAAACACGAAGCTTGAGA
132642 TTTTGCACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.25, T:0.10
Consensus pattern (21 bp):
AAAAACACGAAGCTTGAGAGA
Found at i:137733 original size:21 final size:22
Alignment explanation
Indices: 137693--137733 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
137683 GACAAATTTG
*
137693 TAACCCGAATAACCCGAGAAGA
1 TAACCCGAATAACCCAAGAAGA
*
137715 TAACCCG-ATGACCCAAGAA
1 TAACCCGAATAACCCAAGAA
137734 TATTATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.44, C:0.29, G:0.17, T:0.10
Consensus pattern (22 bp):
TAACCCGAATAACCCAAGAAGA
Found at i:140323 original size:21 final size:22
Alignment explanation
Indices: 140281--140325 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
140271 TATTCTTCTA
*
140281 ATATTATTTTTTATAATTAAAT
1 ATATTATTTTTTATAATAAAAT
140303 ATATTATTTTATTA-AA-AAAAT
1 ATATTATTTT-TTATAATAAAAT
140324 AT
1 AT
140326 GAATACCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 12 0.57
23 3 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATTATTTTTTATAATAAAAT
Found at i:140523 original size:26 final size:26
Alignment explanation
Indices: 140494--140546 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
140484 GTTGGCTTGG
140494 CTTTTGCGTTCAAAATCAGCTTTTGA
1 CTTTTGCGTTCAAAATCAGCTTTTGA
140520 CTTTTGCGTTCAAAATCAGCTTTTGA
1 CTTTTGCGTTCAAAATCAGCTTTTGA
140546 C
1 C
140547 ACAAATCAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (26 bp):
CTTTTGCGTTCAAAATCAGCTTTTGA
Found at i:142400 original size:13 final size:13
Alignment explanation
Indices: 142382--142406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
142372 TTGGAATTCC
142382 AAATAATATTTAT
1 AAATAATATTTAT
142395 AAATAATATTTA
1 AAATAATATTTA
142407 GAATATTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAATAATATTTAT
Found at i:143711 original size:23 final size:24
Alignment explanation
Indices: 143678--143725 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
143668 TGTCATGTTG
143678 TTTTTATTTTAAAGTGATAA-TATA
1 TTTTTATTTTAAA-TGATAAGTATA
*
143702 TTTTTA-TTTAGATGATAAGTATA
1 TTTTTATTTTAAATGATAAGTATA
143725 T
1 T
143726 ATCACAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 6 0.27
23 10 0.45
24 6 0.27
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.54
Consensus pattern (24 bp):
TTTTTATTTTAAATGATAAGTATA
Found at i:144009 original size:14 final size:14
Alignment explanation
Indices: 143990--144021 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
143980 TCCTCTCTCT
143990 TCATCTCTTTTAAC
1 TCATCTCTTTTAAC
144004 TCATCTCTTTTAAC
1 TCATCTCTTTTAAC
144018 TCAT
1 TCAT
144022 TTTCAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATCTCTTTTAAC
Found at i:154845 original size:29 final size:30
Alignment explanation
Indices: 154783--154856 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
154773 ACCCAAAAGA
* *
154783 AATCCATTATGTTTTGTTTTTGAGATAAAAT
1 AATCCATTATG-TTTGTTTTCGAGACAAAAT
* *
154814 AATCCTTTATGTTT-TTTTCGAGACAAATT
1 AATCCATTATGTTTGTTTTCGAGACAAAAT
*
154843 AATCCCTTATGTTT
1 AATCCATTATGTTT
154857 CAAAAATGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 25 0.66
30 3 0.08
31 10 0.26
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (30 bp):
AATCCATTATGTTTGTTTTCGAGACAAAAT
Found at i:155048 original size:31 final size:31
Alignment explanation
Indices: 155010--155092 Score: 139
Period size: 31 Copynumber: 2.7 Consensus size: 31
155000 TTTGTCCCAA
* *
155010 AAAAACATAAAGAATTTTTTTGTCCCAAAAG
1 AAAAACATAAGGGATTTTTTTGTCCCAAAAG
155041 AAAAACATAAGGGATTTTTTTGTCCCAAAAG
1 AAAAACATAAGGGATTTTTTTGTCCCAAAAG
*
155072 AAAAATATAAGGGATTTTTTT
1 AAAAACATAAGGGATTTTTTT
155093 AGTATTTAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.33
Consensus pattern (31 bp):
AAAAACATAAGGGATTTTTTTGTCCCAAAAG
Found at i:155341 original size:61 final size:61
Alignment explanation
Indices: 155273--155400 Score: 220
Period size: 61 Copynumber: 2.1 Consensus size: 61
155263 AAAATATTGA
* * *
155273 ATTTAATTAAATAAAAATAGAATTTTTGGTAAAATAAAACTGTAAAAGTTTAAATAATGTC
1 ATTTAATTAAATAAAAATAAAATTTTTGGTAAAACAAAACTATAAAAGTTTAAATAATGTC
*
155334 ATTTAATTAAATAAAAATAAAATTTTTGGTAAAACAAAACTATTAAAGTTTAAATAATGTC
1 ATTTAATTAAATAAAAATAAAATTTTTGGTAAAACAAAACTATAAAAGTTTAAATAATGTC
155395 ATTTAA
1 ATTTAA
155401 GAAATATATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (61 bp):
ATTTAATTAAATAAAAATAAAATTTTTGGTAAAACAAAACTATAAAAGTTTAAATAATGTC
Found at i:155583 original size:179 final size:180
Alignment explanation
Indices: 155398--155758 Score: 568
Period size: 180 Copynumber: 2.0 Consensus size: 180
155388 TAATGTCATT
*
155398 TAAGAAATATATTTAAAAAATTTTAATATATCTAA-TTTTTTAAGTAAAATAGTAAAATGGTAAA
1 TAAGAAATATATTTAAAAAATTCTAATATATCTAAGTTTTTTAAGTAAAATAGTAAAATGGTAAA
*
155462 AATAAAATA-GTTATAAATATATTAGATTTGA-TTAAATAAAAATAGAGTTTTTAATTGAG-AAA
66 AATAAAATATG-TATAAATATATTAGA-TTAATTTAAATAAAAATAGAGTTTTTAATTGAGTAAA
* * * * *
155524 ATTTATAAAAGTTTAAATAATGGCATTTAAGAAATATATTTGAAAAATAAGGG
129 A-CTATAAAAATTTAAACAATGGCATTTAAGAAATATAATCGAAAAATAAGGG
*
155577 TAAGAAATATATTTAAAAAATTCTAATATATCTAAGTTTTTTAATTAAAATAGTAAAATGGTAAA
1 TAAGAAATATATTTAAAAAATTCTAATATATCTAAGTTTTTTAAGTAAAATAGTAAAATGGTAAA
* *
155642 AATAAAATATGTATAAATATATTATATTAATTTAAATAAAAATAGAGTTTTTAGTTGAGTAAAAC
66 AATAAAATATGTATAAATATATTAGATTAATTTAAATAAAAATAGAGTTTTTAATTGAGTAAAAC
*
155707 TATAAAAATTTAAACAATGGTATTTAAGAAATATAATCGAAAAATAAGGG
131 TATAAAAATTTAAACAATGGCATTTAAGAAATATAATCGAAAAATAAGGG
155757 TA
1 TA
155759 TAATCGTCAA
Statistics
Matches: 167, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
179 37 0.22
180 125 0.75
181 5 0.03
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (180 bp):
TAAGAAATATATTTAAAAAATTCTAATATATCTAAGTTTTTTAAGTAAAATAGTAAAATGGTAAA
AATAAAATATGTATAAATATATTAGATTAATTTAAATAAAAATAGAGTTTTTAATTGAGTAAAAC
TATAAAAATTTAAACAATGGCATTTAAGAAATATAATCGAAAAATAAGGG
Found at i:156228 original size:31 final size:32
Alignment explanation
Indices: 156183--156248 Score: 91
Period size: 31 Copynumber: 2.1 Consensus size: 32
156173 GACTAAATAT
156183 AAAAAAATACCTTATG-TTTTTCTTT-TGGGAC
1 AAAAAAATACCTTATGCTTTTT-TTTATGGGAC
* *
156214 AAAATAATTCCTTATGCTTTTTTTTATGGGAC
1 AAAAAAATACCTTATGCTTTTTTTTATGGGAC
156246 AAA
1 AAA
156249 TTAGTCTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
31 17 0.55
32 14 0.45
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (32 bp):
AAAAAAATACCTTATGCTTTTTTTTATGGGAC
Found at i:156426 original size:29 final size:30
Alignment explanation
Indices: 156384--156454 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
156374 CTCATTTTTG
* *
156384 AAACGTAAGGGATTAATTTGTCCCGAAA-A
1 AAACATAAGGGATTAATTTGTCCCAAAACA
*
156413 AAACATAAGGGATTATTTTGTCCCAAAAGCA
1 AAACATAAGGGATTAATTTGTCCCAAAA-CA
156444 AAACATAAGGG
1 AAACATAAGGG
156455 GTTTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 25 0.68
31 12 0.32
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.23
Consensus pattern (30 bp):
AAACATAAGGGATTAATTTGTCCCAAAACA
Found at i:156521 original size:6 final size:6
Alignment explanation
Indices: 156506--156551 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
156496 TTTGGCATCG
* *
156506 TTTT-T TTTTGT TTTTGT TTTTG- TTTCGT TTATG- TTTTGT TTTTGT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT
156551 T
1 T
156552 GCGTTGTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
5 12 0.35
6 22 0.65
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.80
Consensus pattern (6 bp):
TTTTGT
Found at i:156525 original size:11 final size:11
Alignment explanation
Indices: 156505--156551 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
156495 GTTTGGCATC
156505 GTTTT-TTTTT
1 GTTTTGTTTTT
156515 GTTTTTGTTTTT
1 G-TTTTGTTTTT
* *
156527 GTTTCGTTTAT
1 GTTTTGTTTTT
156538 GTTTTGTTTTT
1 GTTTTGTTTTT
156549 GTT
1 GTT
156552 GCGTTGTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
10 1 0.03
11 24 0.77
12 6 0.19
ACGTcount: A:0.02, C:0.02, G:0.17, T:0.79
Consensus pattern (11 bp):
GTTTTGTTTTT
Found at i:157188 original size:5 final size:5
Alignment explanation
Indices: 157170--157214 Score: 81
Period size: 5 Copynumber: 8.8 Consensus size: 5
157160 TAATAAACTA
157170 TATAT TATTAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TA-TAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
157215 ATTAAGGCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:161872 original size:20 final size:20
Alignment explanation
Indices: 161844--161883 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
161834 GTTCCGTTGT
*
161844 TTAATATCTAACGCAACGAC
1 TTAAAATCTAACGCAACGAC
161864 TTAAAATCTAACGCAACGAC
1 TTAAAATCTAACGCAACGAC
161884 CTAAGTGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.10, T:0.23
Consensus pattern (20 bp):
TTAAAATCTAACGCAACGAC
Found at i:162433 original size:207 final size:200
Alignment explanation
Indices: 162032--162587 Score: 862
Period size: 206 Copynumber: 2.7 Consensus size: 200
162022 TTTTTTACAA
* *
162032 GGTTACGTATAACTTTTAAAAATGATTAAATGTCGTTTCCAAAACACTTACGTAACGACCTCTAG
1 GGTTACGAATAACTTTTAAAAATGATTAAATGTCGTTTCCAAAACACTTACATAACGACCTCTAG
162097 GTAGTTGCCAAAATA-TTTAAAACGATTAAATGTCGTTGCGAAAACCCTTACGCAACGACGTTGT
66 GTAGTTGCCAAAATATTTTAAAACGATTAAATGTCGTTGCGAAAACCCTTACGCAACGACGTTGT
* *
162161 TTTGGTTGTGAAATCTTTTACATAGCAACATTTGATTGGTTGTGTAATAATTTTTGCAGCCACTT
131 TTTGGTTGTGAAATCTTTTACATAGCAACATTTGATTGGTTGTGTAATAATTTTCGCAACCAC-T
162226 TTAATT
195 TTAATT
* *
162232 GGTTACGAATAACTTTTAAAAATGATTAAAAGTCGTTTCCAAAACAGTTACATAACGACCTCTAG
1 GGTTACGAATAACTTTTAAAAATGATTAAATGTCGTTTCCAAAACACTTACATAACGACCTCTAG
162297 GTAGTTGCCAAAATAATTTTAAAACGATTAAATGTCGTTGCGAAAACCCTTACGCAACGCAACGA
66 GTAGTTGCCAAAAT-ATTTTAAAACGATTAAATGTCGTTGCGAAAACCCTT-----ACGCAACGA
* *
162362 CGTTGTTTTGGTTATGAAATCTTTTACATAGCAACTTTTGATTGGTTGTGTAATAATTTTCGCAA
125 CGTTGTTTTGGTTGTGAAATCTTTTACATAGCAACATTTGATTGGTTGTGTAATAATTTTCGCAA
162427 CCACTTTAATT
190 CCACTTTAATT
* * * * * *
162438 GGATATGAATAACTTTTAGAAATGATTAAATGTCGTTTCCAAAACACTTACATTACGACCTATGG
1 GGTTACGAATAACTTTTAAAAATGATTAAATGTCGTTTCCAAAACACTTACATAACGACCTCTAG
* * * * *
162503 GTAGTTGCCAAAATGATTTAAAAACGATTATATGTCGTTGCAAAAACCATTACGCAATGACGTTG
66 GTAGTTGCCAAAAT-ATTTTAAAACGATTAAATGTCGTTGCGAAAACCCTTACGCAACGACGTTG
162568 TTTTGGTTGTGAAATCTTTT
130 TTTTGGTTGTGAAATCTTTT
162588 GAATGGCTTT
Statistics
Matches: 326, Mismatches: 23, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
200 75 0.23
201 33 0.10
202 34 0.10
206 110 0.34
207 74 0.23
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (200 bp):
GGTTACGAATAACTTTTAAAAATGATTAAATGTCGTTTCCAAAACACTTACATAACGACCTCTAG
GTAGTTGCCAAAATATTTTAAAACGATTAAATGTCGTTGCGAAAACCCTTACGCAACGACGTTGT
TTTGGTTGTGAAATCTTTTACATAGCAACATTTGATTGGTTGTGTAATAATTTTCGCAACCACTT
TAATT
Found at i:174089 original size:9 final size:9
Alignment explanation
Indices: 174075--174102 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
174065 CTATGGATCG
174075 GTCGGTTTT
1 GTCGGTTTT
174084 GTCGGTTTT
1 GTCGGTTTT
174093 GTCGGTTTT
1 GTCGGTTTT
174102 G
1 G
174103 CTTACCAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.36, T:0.54
Consensus pattern (9 bp):
GTCGGTTTT
Found at i:175771 original size:19 final size:18
Alignment explanation
Indices: 175738--175773 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
175728 TGGAAATAAT
175738 TCTTCAATGGTCTTCAAA
1 TCTTCAATGGTCTTCAAA
*
175756 TCTTCAAATTGTCTTCAA
1 TCTTC-AATGGTCTTCAA
175774 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (18 bp):
TCTTCAATGGTCTTCAAA
Found at i:191009 original size:22 final size:22
Alignment explanation
Indices: 190981--191131 Score: 85
Period size: 22 Copynumber: 6.9 Consensus size: 22
190971 TGTCTCTGTG
190981 TGGTTATCAAAATTTCATAAGA
1 TGGTTATCAAAATTTCATAAGA
* * *
191003 TGGTTATTATAATTTCATGAGGA
1 TGGTTATCAAAATTTCAT-AAGA
* *
191026 -GGTTATCAAAATTCCAT-AGCG
1 TGGTTATCAAAATTTCATAAG-A
** *
191047 TGGTTA-CGAAAATTTGTTATGGA
1 TGGTTATC-AAAATTTCATA-AGA
* **
191070 -AGTTATCAAAATTTCAGGAGA
1 TGGTTATCAAAATTTCATAAGA
* * **
191091 AGGTTATCAAATTTTCATATTA
1 TGGTTATCAAAATTTCATAAGA
* *
191113 TGATTACCAAAATTTCATA
1 TGGTTATCAAAATTTCATA
191132 GGATCGGGTT
Statistics
Matches: 92, Mismatches: 29, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
20 1 0.01
21 3 0.03
22 83 0.90
23 4 0.04
24 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (22 bp):
TGGTTATCAAAATTTCATAAGA
Found at i:191272 original size:22 final size:22
Alignment explanation
Indices: 191216--191635 Score: 136
Period size: 22 Copynumber: 19.0 Consensus size: 22
191206 TTATCAAAGA
** * *
191216 GATTATCAAAAAGTCATAGCGA
1 GATTATCAAAATTTCATAGTGT
*
191238 GGTTAT-AAGAATTTCATAGTGT
1 GATTATCAA-AATTTCATAGTGT
* * *
191260 GCTTAACAAAATTTCATAAG-GA
1 GATTATCAAAATTTCAT-AGTGT
*
191282 GATTA-CTAATATTTCATAG-G-
1 GATTATC-AAAATTTCATAGTGT
191302 GACGTTATCAAAATTTCATAGTGT
1 GA--TTATCAAAATTTCATAGTGT
** *
191326 GGGTATTAAAATTTTC-TAGTGT
1 GATTATCAAAA-TTTCATAGTGT
*
191348 GATTATCAAAATTTCATATGAAGGT
1 GATTATCAAAATTTCATA-G--TGT
* ** *
191373 TATTAAAGTCTTAATTTCATA-AG-
1 GATT--A-TCAAAATTTCATAGTGT
* * * *
191396 GAGTACCAAAATTTGATAGAAG-
1 GATTATCAAAATTTCATAG-TGT
* *
191418 G-TTATC-AAATCTCATAGAGT
1 GATTATCAAAATTTCATAGTGT
* *
191438 GATTATCGAAATTTCATAGAGAT
1 GATTATCAAAATTTCATAGTG-T
*
191461 CGGATTATCAAAATTT-ATAG-GAA
1 --GATTATCAAAATTTCATAGTG-T
*
191484 GATTATCAAAATTTCAAAGTGTT
1 GATTATCAAAATTTCATAGTG-T
* *
191507 G-TTATCAAAATTTCAAACGAG-
1 GATTATCAAAATTTCATA-GTGT
* *
191528 G-TTATCAAAATTTCATAGAGG
1 GATTATCAAAATTTCATAGTGT
* * * * *
191549 GGTCAACAAAATTTTATAGAG-
1 GATTATCAAAATTTCATAGTGT
* ** *
191570 AAGTTATCAAAATTTCATAAAGA
1 GA-TTATCAAAATTTCATAGTGT
* * * *
191593 GGTTATCAAATTTTCAAAATGT
1 GATTATCAAAATTTCATAGTGT
*
191615 GATTACCAAAATTTCATAGTG
1 GATTATCAAAATTTCATAGTG
191636 GTACTTCTGG
Statistics
Matches: 306, Mismatches: 60, Indels: 64
0.71 0.14 0.15
Matches are distributed among these distances:
19 2 0.01
20 24 0.08
21 50 0.16
22 174 0.57
23 20 0.07
24 6 0.02
25 18 0.06
27 1 0.00
28 11 0.04
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (22 bp):
GATTATCAAAATTTCATAGTGT
Found at i:191599 original size:87 final size:86
Alignment explanation
Indices: 191469--191633 Score: 210
Period size: 87 Copynumber: 1.9 Consensus size: 86
191459 ATCGGATTAT
* * *
191469 CAAAATTTATAGGAAGATTATCAAAATTTCAAAGTGTTGTTATCAAAATTTC-AAACGAGGTTAT
1 CAAAATTTATAGGAAGATTATCAAAATTTCAAAGAG-TGTTATCAAAATTTCAAAACGAGATTAC
191533 CAAAATTTCATAGAGGGGTCAA
65 CAAAATTTCATAGAGGGGTCAA
* * *
191555 CAAAATTTTATAGAGAAG-TTATCAAAATTTCATAAAGAG-GTTATCAAATTTTCAAAATGTGAT
1 CAAAA-TTTATAG-GAAGATTATCAAAATTTC--AAAGAGTGTTATCAAAATTTCAAAACGAGAT
191618 TACCAAAATTTCATAG
62 TACCAAAATTTCATAG
191634 TGGTACTTCT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
86 5 0.07
87 33 0.49
88 25 0.37
89 5 0.07
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (86 bp):
CAAAATTTATAGGAAGATTATCAAAATTTCAAAGAGTGTTATCAAAATTTCAAAACGAGATTACC
AAAATTTCATAGAGGGGTCAA
Found at i:191627 original size:66 final size:65
Alignment explanation
Indices: 191507--191633 Score: 157
Period size: 66 Copynumber: 1.9 Consensus size: 65
191497 TCAAAGTGTT
* * * *
191507 GTTATCAAAATTTCAAACGAGGTTATCAAAATTTCATAGAGGGGTCAACAAAATTTTATAGAGAA
1 GTTATCAAAATTTCAAAAGAGGTTATCAAAATTTCATAAAGGGATCAACAAAATTTCATAGAGAA
* * * *
191572 GTTATCAAAATTTCATAAAGAGGTTATCAAATTTTCA-AAATGTGATTACCAAAATTTCATAG
1 GTTATCAAAATTTCA-AAAGAGGTTATCAAAATTTCATAAA-GGGATCAACAAAATTTCATAG
191634 TGGTACTTCT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
65 17 0.33
66 35 0.67
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (65 bp):
GTTATCAAAATTTCAAAAGAGGTTATCAAAATTTCATAAAGGGATCAACAAAATTTCATAGAGAA
Found at i:191761 original size:22 final size:22
Alignment explanation
Indices: 191733--192115 Score: 145
Period size: 22 Copynumber: 17.6 Consensus size: 22
191723 TCAGGGAGGA
191733 TATCAAAATTTCATATGAAGGT
1 TATCAAAATTTCATATGAAGGT
**
191755 TATCAAAATTTCATAGTTTA-GT
1 TATCAAAATTTCATA-TGAAGGT
* * *
191777 TTTCAAAATTTCATAAGAGGGT
1 TATCAAAATTTCATATGAAGGT
* * * *
191799 TATCAAAATTTCACAGGGAGAT
1 TATCAAAATTTCATATGAAGGT
*
191821 TAACAAAATTTCATAATGAA-GT
1 TATCAAAATTTCAT-ATGAAGGT
** *
191843 TATCAAAAAATCATAGTG-AGGG
1 TATCAAAATTTCATA-TGAAGGT
*
191865 TATCAAAA-TT--TGT-AA--T
1 TATCAAAATTTCATATGAAGGT
* * *
191881 TATCAAGATTTCATAAGGAGGT
1 TATCAAAATTTCATATGAAGGT
* * * *
191903 TATTAAAATTTTATAGGGAGGTT
1 TATCAAAATTTCATATGAAGG-T
* *
191926 TATTAAAATTTTATA-GCAAGGT
1 TATCAAAATTTCATATG-AAGGT
*
191948 TATCACAATTTCATAGTGTAA--T
1 TATCAAAATTTCATA-TG-AAGGT
* * *
191970 TATCAAAATTTCAGAGTG-TGAT
1 TATCAAAATTTCATA-TGAAGGT
*
191992 TA-CTAACAA-TTCATATGGAGGT
1 TATC-AA-AATTTCATATGAAGGT
* * * ****
192014 TTTTAAATTTTCATAACTTGGT
1 TATCAAAATTTCATATGAAGGT
* * *
192036 TATCAATATATCATATGGAGGT
1 TATCAAAATTTCATATGAAGGT
* * *
192058 TATCAACATCTCATA-GTATTGGT
1 TATCAAAATTTCATATG-A-AGGT
192081 TATCAAAATTTCAT-TCGGAA-GT
1 TATCAAAATTTCATAT--GAAGGT
192103 TATCAAAATTTCA
1 TATCAAAATTTCA
192116 CAGTGAAGTC
Statistics
Matches: 266, Mismatches: 67, Indels: 56
0.68 0.17 0.14
Matches are distributed among these distances:
16 7 0.03
17 2 0.01
18 2 0.01
19 2 0.01
20 1 0.00
21 8 0.03
22 198 0.74
23 41 0.15
24 4 0.02
25 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (22 bp):
TATCAAAATTTCATATGAAGGT
Found at i:191790 original size:44 final size:45
Alignment explanation
Indices: 191714--192120 Score: 162
Period size: 44 Copynumber: 9.4 Consensus size: 45
191704 CTATGGAGTA
191714 ATCAAAATTTC--AG-GGAGGA-TATCAAAATTTCATATGAAGGTT
1 ATCAAAATTTCATAGTGGA-GATTATCAAAATTTCATATGAAGGTT
** * * *
191756 ATCAAAATTTCATAGTTTAG-TTTTCAAAATTTCATAAGAGGGTT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATATGAAGGTT
* *
191800 ATCAAAATTTCACAG-GGAGATTAACAAAATTTCATAATGAA-GTT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCAT-ATGAAGGTT
** ** *
191844 ATCAAAAAATCATAGT-GAGGGTATCAAAA-TT--TGT-AA--TT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATATGAAGGTT
* * * * * * *
191882 ATCAAGATTTCATA-AGGAGGTTATTAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATATGAAGG-TT
* * ** * *
191927 ATTAAAATTTTATAG-CAAGGTTATCACAATTTCATAGTGTAA--TT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATA-TG-AAGGTT
* * *
191971 ATCAAAATTTCAGAGT-GTGATTA-CTAACAA-TTCATATGGAGGTT
1 ATCAAAATTTCATAGTGGAGATTATC-AA-AATTTCATATGAAGGTT
* * * * * * * *
192015 TTTAAATTTTCATAACTTG-G-TTATCAATATATCATATGGAGGTT
1 ATCAAAATTTCAT-AGTGGAGATTATCAAAATTTCATATGAAGGTT
* * *** *
192059 ATCAACATCTCATAGTATTGGTTATCAAAATTTCAT-TCGGAA-GTT
1 ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATAT--GAAGGTT
*
192104 ATCAAAATTTCACAGTG
1 ATCAAAATTTCATAGTG
192121 AAGTCTTCAA
Statistics
Matches: 266, Mismatches: 68, Indels: 59
0.68 0.17 0.15
Matches are distributed among these distances:
38 24 0.09
39 4 0.02
40 1 0.00
41 2 0.01
42 13 0.05
43 10 0.04
44 139 0.52
45 68 0.26
46 4 0.02
47 1 0.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (45 bp):
ATCAAAATTTCATAGTGGAGATTATCAAAATTTCATATGAAGGTT
Found at i:191828 original size:66 final size:66
Alignment explanation
Indices: 191728--191875 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 66
191718 AAATTTCAGG
* * * * * * ** * **
191728 GAGGATATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTTTAGTTTTCAAAATTTCATA-
1 GAGGGTATCAAAATTTCACAGGAAGATTAACAAAATTTCATAATGAAGTTATCAAAAAATCATAG
191792 A
66 A
*
191793 GAGGGTTATCAAAATTTCACAGGGAGATTAACAAAATTTCATAATGAAGTTATCAAAAAATCATA
1 GAGGG-TATCAAAATTTCACAGGAAGATTAACAAAATTTCATAATGAAGTTATCAAAAAATCATA
*
191858 GT
65 GA
191860 GAGGGTATCAAAATTT
1 GAGGGTATCAAAATTT
191876 GTAATTATCA
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
65 4 0.06
66 59 0.87
67 5 0.07
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (66 bp):
GAGGGTATCAAAATTTCACAGGAAGATTAACAAAATTTCATAATGAAGTTATCAAAAAATCATAG
A
Found at i:191932 original size:23 final size:22
Alignment explanation
Indices: 191888--191950 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
191878 AATTATCAAG
* *
191888 ATTTCATAAGGAGGTTATTAAA
1 ATTTTATAGGGAGGTTATTAAA
191910 ATTTTATAGGGAGGTTTATTAAA
1 ATTTTATAGGGAGG-TTATTAAA
**
191933 ATTTTATAGCAAGGTTAT
1 ATTTTATAGGGAGGTTAT
191951 CACAATTTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 16 0.44
23 20 0.56
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (22 bp):
ATTTTATAGGGAGGTTATTAAA
Found at i:192123 original size:22 final size:21
Alignment explanation
Indices: 192079--192157 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 21
192069 CATAGTATTG
192079 GTTATCAAAATTTCATTC-GGAA
1 GTTATCAAAATTTCA--CAGGAA
192101 GTTATCAAAATTTCACAGTGAA
1 GTTATCAAAATTTCACAG-GAA
* * *
192123 GTCT-TCAAAATTCCTCAGGGGA
1 GT-TATCAAAATTTCACA-GGAA
*
192145 GTTAACAAAATTT
1 GTTATCAAAATTT
192158 TATAAGAAGG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
20 1 0.02
21 2 0.04
22 42 0.89
23 2 0.04
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (21 bp):
GTTATCAAAATTTCACAGGAA
Found at i:192190 original size:21 final size:22
Alignment explanation
Indices: 192145--192187 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
192135 CCTCAGGGGA
*
192145 GTTAACAAAATTTTATAAGAAG
1 GTTAACAAAAATTTATAAGAAG
192167 GTTAA-AAAAATTTATAA-AAG
1 GTTAACAAAAATTTATAAGAAG
192187 G
1 G
192188 GTTTTCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.53, C:0.02, G:0.14, T:0.30
Consensus pattern (22 bp):
GTTAACAAAAATTTATAAGAAG
Found at i:193678 original size:3 final size:3
Alignment explanation
Indices: 193670--193701 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
193660 ACTCCTATAT
193670 ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
193702 TTCCTGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:194162 original size:2 final size:2
Alignment explanation
Indices: 194157--194190 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
194147 ATTAGGAATC
194157 AT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A
194191 AAAGTACGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:194692 original size:22 final size:22
Alignment explanation
Indices: 194661--194855 Score: 162
Period size: 22 Copynumber: 8.9 Consensus size: 22
194651 ACTTTGCATA
*
194661 TTATCGAAATTTCATAGTGTGG
1 TTATCAAAATTTCATAGTGTGG
* *
194683 CTATCAAAATTTCATAATGTGG
1 TTATCAAAATTTCATAGTGTGG
*
194705 TTATCAAAATTTCAT--TGAAGG
1 TTATCAAAATTTCATAGTG-TGG
* * *
194726 TAATCAAAATTTCATATTGTGC
1 TTATCAAAATTTCATAGTGTGG
* * *
194748 TTGTCAAAATTTCATAGTGAGA
1 TTATCAAAATTTCATAGTGTGG
* * * **
194770 TTAACGAAA-TTCTATAGGGAAG
1 TTATCAAAATTTC-ATAGTGTGG
* * * *
194792 TTATCAACATTCCATAGGGAGG
1 TTATCAAAATTTCATAGTGTGG
*
194814 TTATCAAAATTTCATAGTATGG
1 TTATCAAAATTTCATAGTGTGG
*
194836 TTATCCAAATTTCATAGTGT
1 TTATCAAAATTTCATAGTGT
194856 ACCAAATCAA
Statistics
Matches: 137, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
20 2 0.01
21 19 0.14
22 112 0.82
23 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTGTGG
Done.