Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016893.1 Corchorus olitorius cultivar O-4 contig16926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147248

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1609--1664
22
2.5
22
88
0
76
39
7
8
44
1.63
1726--1766
2
20.5
2
100
0
82
51
0
0
48
1.00
1996--2067
31
2.3
31
75
13
76
26
4
8
61
1.43
2494--2540
17
2.8
17
90
0
67
27
42
21
8
1.81
2536--2597
16
3.8
16
70
10
54
46
35
11
6
1.65
3217--3409
93
2.1
93
85
1
253
33
11
3
52
1.53
3242--3424
93
2.0
93
90
0
285
33
12
2
51
1.52
14347--14659
155
2.0
155
100
0
626
21
23
17
37
1.94
16706--16748
22
2.0
21
86
4
59
16
30
11
41
1.83
20812--20864
12
4.8
12
75
17
60
35
0
7
56
1.28
21464--21511
25
1.9
25
95
0
87
47
12
14
25
1.79
21913--22241
164
2.0
161
86
2
462
36
10
10
42
1.74
22463--22609
22
6.7
22
72
10
104
34
10
17
36
1.85
22464--22608
44
3.3
44
78
9
118
35
11
17
35
1.86
22462--22695
66
3.5
68
81
10
241
35
8
17
37
1.82
22700--22799
22
4.5
22
73
14
80
37
9
19
35
1.83
22900--22940
21
1.9
22
90
5
66
46
7
12
34
1.69
22876--22957
22
3.6
23
79
11
71
40
8
13
37
1.75
22987--23047
22
2.8
22
78
14
63
42
14
18
24
1.88
23033--23086
22
2.5
22
78
0
63
44
11
9
35
1.72
23158--23582
22
19.5
22
71
10
212
36
9
17
36
1.82
23263--23336
38
1.9
39
88
2
114
36
6
18
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23302--23387
23
3.7
23
86
4
111
34
8
17
39
1.79
23456--23544
45
2.0
45
82
4
108
33
8
17
39
1.82
24355--24379
13
1.9
13
100
0
50
44
8
0
48
1.32
33152--33202
19
2.7
19
77
14
61
50
1
0
47
1.12
33777--33819
19
2.4
18
81
11
52
18
11
18
51
1.76
36541--36592
26
2.0
26
96
0
95
38
17
7
36
1.78
37975--38067
3
31.0
3
77
4
80
6
34
1
58
1.31
42118--42171
27
2.0
28
88
3
83
46
3
11
38
1.57
52077--52153
38
2.0
38
92
0
127
28
9
31
31
1.88
52441--52479
15
2.5
16
87
4
53
79
5
10
5
1.04
53064--53123
29
2.0
29
90
3
93
21
20
23
35
1.96
60617--60714
48
2.0
48
98
0
187
33
6
30
29
1.82
70104--70128
2
12.5
2
100
0
50
52
0
0
48
1.00
74440--74488
25
2.0
25
84
8
64
40
2
0
57
1.10
88818--88844
4
6.8
4
100
0
54
25
0
22
51
1.48
88845--88920
3
25.3
3
91
0
125
65
2
0
31
1.06
89120--89213
45
2.2
43
86
7
129
37
21
6
35
1.79
91910--91975
31
2.1
32
88
2
98
27
24
10
37
1.88
95317--95385
36
1.9
36
96
0
129
23
8
7
60
1.51
96515--96597
6
13.8
6
96
0
139
51
0
12
36
1.39
97106--97151
20
2.3
20
92
0
83
34
0
15
50
1.44
97102--97148
24
2.0
24
91
0
76
34
0
14
51
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97110--97151
16
2.6
16
84
0
57
33
0
16
50
1.46
106109--106294
36
5.3
36
77
10
129
26
17
10
45
1.81
106198--106953
74
10.3
71
78
10
448
23
17
12
47
1.81
106198--106848
36
18.1
35
77
7
427
22
17
12
46
1.82
106337--106428
37
2.8
30
73
20
94
25
17
10
46
1.80
106388--106956
36
15.2
38
77
9
464
22
17
12
47
1.81
106206--106916
109
6.5
109
78
11
310
22
17
12
47
1.81
106361--106970
74
8.2
73
80
8
472
22
17
12
47
1.80
106800--106896
48
2.0
48
95
0
176
20
12
12
54
1.69
106726--106970
122
2.0
122
91
1
402
22
14
11
51
1.75
110772--110853
40
2.0
42
85
7
114
32
23
21
21
1.98
114158--114256
29
3.4
29
87
6
130
40
36
11
12
1.78
132830--133053
29
7.7
29
80
5
220
20
17
21
39
1.92
138543--138581
20
1.9
21
84
5
53
51
15
10
23
1.73
145273--145328
24
2.3
24
96
0
103
39
12
12
35
1.81
147220--147248
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!