Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016894.1 Corchorus olitorius cultivar O-4 contig16927, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66531

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
774--816
18
2.3
18
88
4
59
58
2
2
37
1.24
5553--5607
28
2.0
28
85
0
74
20
18
18
43
1.88
15279--15336
30
2.0
29
93
3
98
31
8
3
56
1.46
17675--17744
31
2.3
30
78
7
79
40
20
12
27
1.88
18978--19010
13
2.5
13
90
9
50
75
0
3
21
0.93
19159--19189
6
5.3
6
92
7
55
16
0
67
16
1.23
29427--29451
6
4.2
6
100
0
50
32
16
36
16
1.90
29455--29484
3
10.0
3
92
0
51
63
0
36
0
0.95
32289--32321
17
1.9
17
88
11
50
51
12
12
24
1.73
34477--34510
15
2.3
15
89
0
50
17
29
29
23
1.97
35781--35826
18
2.6
18
78
0
56
45
0
2
52
1.13
37175--37276
51
2.0
50
83
9
127
21
23
13
41
1.89
38800--38852
24
2.2
24
100
0
106
47
0
13
39
1.43
44676--44734
21
2.9
21
85
5
77
35
11
18
33
1.88
59407--59453
2
23.5
2
100
0
94
0
0
48
51
1.00
62014--62041
2
14.0
2
100
0
56
50
0
0
50
1.00
63381--63542
84
1.9
84
92
3
272
51
1
11
34
1.49

Tables:   1

The End!